Gene detail information of Glyur000064s00005660 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12370.2 | 0 | photolyase 1 |
| NR | XP_004511645.1 | 0 | PREDICTED: deoxyribodipyrimidine photo-lyase-like [Cicer arietinum] |
| COG | YP_005845497.1 | 9.00E-165 | Deoxyribodipyrimidine photolyase [Ignavibacterium album JCM 16511] |
| Swissprot | tr|Q9SB00|PHR_ARATH | 0 | Deoxyribodipyrimidine photo-lyase |
| trEMBL | tr|G7KG67|G7KG67_MEDTR | 0 | CPD photolyase {ECO:0000313|EMBL:AES94195.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00064 | 368795 | 372807 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000064s00005660.1 | PF00875.13 | DNA_photolyase | 28 | 187 | 4.70E-28 |
| Glyur000064s00005660.1 | PF03441.9 | FAD_binding_7 | 231 | 463 | 6.00E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.399 |
| SRR1783600 | control | 0.484 |
| SRR1783602 | moderate drought stress | 0.160 |
| SRR1811619 | moderate drought stress | 0.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.674 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.669 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.313 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.242 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.115 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.171 |
| SRR2868004 | Drought Stress (root) | 9.524 |
| SRR2967015 | Control (root) | 6.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.608 |
| SRR9715740 | Leaf | 23.356 |
| SRR9715741 | Leaf | 12.987 |
| SRR9715739 | Root | 0.054 |
| SRR9715742 | Root | 0.310 |
| SRR9715743 | Root | 0.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.966 |
| SRR8749028 | MeJA induced 9h | 3.159 |
| SRR8749029 | MeJA induced 9h | 4.697 |
| SRR8749030 | Uninduced | 0.759 |
| SRR8749031 | Uninduced | 0.635 |
| SRR8749032 | Uninduced | 0.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.178 |
| SRR8400027 | Control - Root | 2.062 |