Gene detail information of Glyur000064s00005653 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00100.1 | 2.00E-73 | ribosomal protein S13A |
| NR | XP_007134868.1 | 1.45E-95 | hypothetical protein PHAVU_010G082900g [Phaseolus vulgaris] |
| COG | NP_614876.1 | 5.00E-42 | 30S ribosomal protein S15 [Methanopyrus kandleri AV19] |
| Swissprot | tr|P62302|RS13_SOYBN | 2.00E-97 | 40S ribosomal protein S13 |
| trEMBL | tr|V7AML9|V7AML9_PHAVU | 5.00E-96 | Uncharacterized protein {ECO:0000313|EMBL:ESW06862.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00064 | 335042 | 336168 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000064s00005653.1 | PF08069.7 | Ribosomal_S13_N | 1 | 60 | 1.90E-31 |
| Glyur000064s00005653.1 | PF00312.17 | Ribosomal_S15 | 66 | 133 | 1.30E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.917 |
| SRR1783600 | control | 37.617 |
| SRR1783602 | moderate drought stress | 42.815 |
| SRR1811619 | moderate drought stress | 42.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.811 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.365 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.129 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.836 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.966 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.960 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.208 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.143 |
| SRR2868004 | Drought Stress (root) | 31.323 |
| SRR2967015 | Control (root) | 33.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.503 |
| SRR9715740 | Leaf | 24.077 |
| SRR9715741 | Leaf | 18.429 |
| SRR9715739 | Root | 31.012 |
| SRR9715742 | Root | 26.998 |
| SRR9715743 | Root | 20.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 118.727 |
| SRR8749028 | MeJA induced 9h | 81.301 |
| SRR8749029 | MeJA induced 9h | 89.666 |
| SRR8749030 | Uninduced | 21.240 |
| SRR8749031 | Uninduced | 5.646 |
| SRR8749032 | Uninduced | 20.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.607 |
| SRR8400027 | Control - Root | 40.768 |