Gene detail information of Glyur000064s00005646 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12390.1 | 4.00E-47 | pectin methylesterase inhibitor 1 |
| NR | AFK45126.1 | 1.15E-102 | unknown [Medicago truncatula] |
| Swissprot | tr|P17407|21KD_DAUCA | 5.00E-59 | 21 kDa protein (Precursor) |
| trEMBL | tr|I3SXY4|I3SXY4_MEDTR | 4.00E-103 | Uncharacterized protein {ECO:0000313|EMBL:AFK45126.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00064 | 305927 | 306565 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000064s00005646.1 | PF04043.10 | PMEI | 37 | 195 | 1.10E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.906 |
| SRR1783600 | control | 12.249 |
| SRR1783602 | moderate drought stress | 47.267 |
| SRR1811619 | moderate drought stress | 50.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.866 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.703 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 174.519 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 160.213 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.847 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.755 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.748 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.630 |
| SRR2868004 | Drought Stress (root) | 150.039 |
| SRR2967015 | Control (root) | 378.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.587 |
| SRR9715740 | Leaf | 1.457 |
| SRR9715741 | Leaf | 1.987 |
| SRR9715739 | Root | 51.989 |
| SRR9715742 | Root | 13.842 |
| SRR9715743 | Root | 23.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.913 |
| SRR8749028 | MeJA induced 9h | 12.998 |
| SRR8749029 | MeJA induced 9h | 13.150 |
| SRR8749030 | Uninduced | 2.291 |
| SRR8749031 | Uninduced | 0.932 |
| SRR8749032 | Uninduced | 6.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 58.539 |
| SRR8400027 | Control - Root | 36.309 |