Gene detail

Gene detail information of Glyur000064s00005641

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12250.2	8.00E-85	Pentapeptide repeat-containing protein
NR	XP_004511661.1	1.22E-169	PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Cicer arietinum]
COG	YP_007125802.1	4.00E-31	pentapeptide repeat protein [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q8H1Q1\|TL225_ARATH	4.00E-121	Thylakoid lumenal protein At1g12250, chloroplastic (Precursor)
trEMBL	tr\|I3SK82\|I3SK82_LOTJA	4.00E-167	Uncharacterized protein {ECO:0000313\|EMBL:AFK40674.1}

Sequence

Transcript Sequence

>Glyur000064s00005641.1
CTGGAACACGTGTGCTACTANTTACCACCACTCACTTCCTTGACTTCAATGACGAATTGTCGAAGTGCTCCTCCATCAAAAAAAAGAATTGTCGAAGTGCTAGCTTGATTTTTCCTTCCTCACTGCCCAGTAGATTTTCATATCTTGCTGCTCAATATCTTCCTTATGATGGCACTTAGTAGTAATTCCCTGTCACCACTTTCAATTAATTCCCTCTATGCATCTTCTTCACGNTCAAGTTCCAAGATTTCAAACATACCGCATGTTCATTCGAAGTCCTCTCCAGTTGTCTGCCAAATGAACTCAGACAGAGATCATCATCCTCAAGATTCCAGGAAATGGGGAAAACTGGTTTCGGCCACGTTGGCAGCCGCGGTTATNGCGTTCAGCTCTGACATGTCTGCCCTTGCTGATCTTAACAAATATGAGGCTGAGTTGAGGGGTGAATTTGGTATAGGATCGGCTGCTCAATTTGGCTCTGCAGACCTCAGGAAAGCAGTGCATGTGAATGAAAATTTCAGAAGAGCCAATTTCACAGCTGCTGATATGAGAGAATCTGATTTTAGCGGTTCTACTTTCAATGGTGCATACCTTGAGAAAGCTGTTGCATACAAGGCAAACTTTACGGGTGCCGATTTAAGTGATACATTGATGGATCGCATGGTACTTAATGAAGCCAATCTCACGAATGCCATTCTTGCTAGAACAGTCCTCACACGGAGTGACCTTGGAGGTGCCGTCATTGAAGGTGCTGACTTTAGTGATGCTGTGTTGGACCTTCCCCAAAAGCAGGCTTTGTGCAAGTATGCTAGTGGCACAAATCCTGTAACAGGAGTAAGCACAAGACTAAGCTTAGGTTGCGGGAACAAACGACGAAATGCTTATGGCTCCCCATCATCTCCCCTTTTAAGTGCTCCACCACAAAAACTGCTTGACCGAGATGGTTTCTGTGATGANGCAACAGGGCTTTGCGATGCAAAGTAGTTTACTTGGAGTAATCATGGCTACAATTAAAGTCATATTCGTGTAAATATATCAAGGTCTACAATTGAGGCTCTGTGTGCCTTTTGTACTTCTAAGAGCATATCCGCAACAAATGAATCCCTCTTGAGCTACCCTATTAGTTCTGTGTTGNGTATTTTGGTCTCTGTTTGGCTAGCCAGAAACTATTTTGTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00064	280259	283501	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000064s00005641.1	PF00805.17	Pentapeptide	117	155	1.70E-09
Glyur000064s00005641.1	PF00805.17	Pentapeptide	168	203	4.90E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.233
SRR1783600	control	12.300
SRR1783602	moderate drought stress	9.347
SRR1811619	moderate drought stress	9.257

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.064
DRR006520	Root Summer glycyrrhizin high producing strain	12.069
DRR006521	Root Winter glycyrrhizin high producing strain	1.984
DRR006522	Root Winter glycyrrhizin high producing strain	2.067
DRR006523	Root Summer glycyrrhizin low producing strain	11.908
DRR006524	Root Summer glycyrrhizin low producing strain	11.926
DRR006525	Leaf Summer glycyrrhizin high producing strain	123.627
DRR006526	Leaf Summer glycyrrhizin high producing strain	122.306

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.430
SRR2868004	Drought Stress (root)	18.571
SRR2967015	Control (root)	15.317

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	71.265
SRR9715740	Leaf	142.307
SRR9715741	Leaf	85.343
SRR9715739	Root	2.406
SRR9715742	Root	4.026
SRR9715743	Root	3.157

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.307
SRR8749028	MeJA induced 9h	4.543
SRR8749029	MeJA induced 9h	3.594
SRR8749030	Uninduced	0.338
SRR8749031	Uninduced	0.122
SRR8749032	Uninduced	0.191

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.992
SRR8400027	Control - Root	12.990