Gene detail

Gene detail information of Glyur000064s00005638

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62600.1	9.00E-160	Flavin-binding monooxygenase family protein
NR	XP_003611271.1	0	Flavin-containing monooxygenase FMO GS-OX5 [Medicago truncatula]
COG	YP_005086914.1	5.00E-44	Dimethylaniline monooxygenase [Pseudovibrio sp. FO-BEG1]
Swissprot	tr\|Q9SXD5\|GSXL3_ARATH	0	Flavin-containing monooxygenase FMO GS-OX-like 3
trEMBL	tr\|I1LGN1\|I1LGN1_SOYBN	0	Flavin-containing monooxygenase {ECO:0000256\|RuleBase:RU361177}

Sequence

Transcript Sequence

>Glyur000064s00005638.1
TTAATTTTCAAGTTTTTCTTAATTTGTAGATCTACTCCGTATTTCTCTTTCTCTTTTTATCCTTTCCCTTCACATGAAGATATAATAATGCGTGATTCCTGTGGCTCACGATTCCTCTGATTCTTTCACTTATAAGAACAAAAAAAGCTGGGTCGTTGACGTCAATGCCAATTAGATTCACCATGTCCACCGCACCACAACTACTCACGCCGCGCCACGTGGCAGTGATAGGAGCCGGCGCTGCCGGCCTGGTGGCGGCGCGGGAGCTCCGACGGGAAGGGCATCGGGTGGTGGTTTTCGAGCGAGGAGACCAAGTGGGTGGCTCGTGGGTGTACACTGCGGAGGTGGAATCGGACCCTCTTGGTTTGGACCCGAAGCGGAGGTTGGTCCACCCGAGCCTGTACGAGTCGCTCCGAACCAATCTGCCTCGGGAGTGCATGGGGTTCCGAGACTATCCGTTCAGGAGGAGGGAAGGGAAGGGGAGGGATTCTAGAAGGTTCCCGGGTCACAGAGAAGTGTTATTGTACCTGCAGGATTTCGCTGCTGATTTTGAGATCGGTGAATTGGTGAGGTTTCAGACGGAGGTGGTGTTTGCTGGGTTTGGTGAGGGTGGAAAATGGACGGTCAGATCAAGATCACACGATAGTGACTGTGTGGATGAGATTTACGACGCCGTCGTCGTTTGCAACGGACATTATGTTCAGCCTCGACTCGCTCGTATCCCCGGCATTAGTGCATGGCCAGGGAAGCAGATGCACAGCCATAATTATAGGACTCCTGAGCCCTTTCAAGATCAAGTTGTAGTTCTAATAGGTAGTGCTGCTAGTGCGGTTGATATCTCTCGAGAAGTGGCAACAGTTGCTAAAGAAGTCCACATTGCAGGCAGGTCCGTTGAAGAAGATANGCTTGGAAATGTGCCTGGCCATGATAACGTGTGGCTCCATTCCATGATTAAAGGCGTTCATGAAGATGGTACAGTGGTTTTCCAAGATGGAAATGCGGTTAGTGCTGACTTCATTTTACATTGCACAGGGTACAAGTATGATTTCCCTTTCCTTGAAACCAACGGGGTGGTGACTGTAGATGACAATCGTGTGGGACCACTCTACAAGCATGTTTTTCCACCAGCGTTAGCTCCATGGCTTTCATTTGTTGGGTTGCCTTGGAAGGTTGCTCCCTTCCCCTTGTTCGAACTGCAGAGCAAGTGGATAGCTGGAGTATTGTCTAATCGCATTGCCCTTCCTTCACAAGAGGAGATGGCAGAAGATATCGAAGCTTTTTACTCGTCGCTTGAAGAGTCTCGCACTCCCAAGAGTTACACTCATAGAATGTCCCTTGTCCAGTGGGACTACAATAACTGGATTGCGGATCAGTGTGGGGTATCTGCTATTGAAGAATGGAGAAAGCAAATGTATGAGGCCACGTCTAAGAACAGGATCTTGCGACCTGAGACTTACCGTGACGAGTGGGACGATGATGACTTGGTTCTACAAGCTGAACAGGATTTTGCTAAATATCTTATCTGATGTAATGTTATATTGTTGTGAGAAGTTCTAGGCCAAGTTAGCCAAGTGCCTCAGCTCCCAATTACGGTACAGTTTTGAAGAAAANTTTACCCTAAAAAATAAGAATGTATTTATATTTATATGTTCGGAGTATTATTAATAATTCATCCATTAATGAACATGTGATAATGATGCGATCACCTTTTATTTTATTTTTAATGTCTATTACACTATATCAGAATGCCATTAAGGTGTCAAAGAAATAATACACTTGACTATGCAGTTACTGAACTTCTTGTTCTGCTCATGACACAAGTAGCATAATACTAGCATCAATGCAACCCATTAAACTCGGTATTCATACATTGGAGAGTAGGTAAGAAGTCNAGATTTCTACATGCTGCCCTTGATAATGCTATTTTTAAAATTCTATTACCTCGTAAAGACCCAGGTGCATGATGCACCATGCATCTATTCCATTTTTCTGTTTATTTTCCCTCTAGTTGACCAAGCTCGGGAGAAAAGAAACATTGTTTGAACTATCCTCTCCCCAATGTTGGCTGATGCTATTAGAAGCAATAGAACACTTAAATCCCGCATCTTGCTGCTAGTCAATAGTCATGGTATCTCGCTTTAAGAATTCAAACAGTCATAAAATAAACAGCCTCAGCTTCTTTCTTCATATAATTCAACTGGTGAGCACGAAGAATTGGAATCAGTTCTNTGTCCAGAAACAGAAATGCGATTTTTCTTCTAAAACAAAACTTAAGTAGGAGTGCAGCTCAGCACTGAAATTTGTCTTGCATTATTTTCTAACGATACCAGTTCAAGACTAAAAACAATTAACTAAACAATTTTATTGGTGTAAAAAAGTAACATGAGACTACCTGACCTCTACTTTTCCTTAGATGATGCCTTTCCAGATTCCTTGGGTTTCCCTTTCTTCTTTGTCTCACACAACTTCCTTCCACGTTTCTTGGTCGGTTCTTCCTCTGTGAACACATAGCTATATTTTTCCAGTACCCTCTCTTTCTCTTCAACTAAGCCTAACATCTCATATGCATTTGCCACTTTCTGAATGATTAATTTATCCCGAGGCTTACGATCAAAAGCTTCCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00064	260615	265046	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0004499 N,N-dimethylaniline monooxygenase activity

GO:0050660 flavin adenine dinucleotide binding

GO:0050661 NADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000064s00005638.1	PF00743.14	FMO-like	17	242	4.80E-36
Glyur000064s00005638.1	PF00743.14	FMO-like	256	401	5.20E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.044
SRR1783600	control	2.050
SRR1783602	moderate drought stress	2.465
SRR1811619	moderate drought stress	2.199

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.886
DRR006520	Root Summer glycyrrhizin high producing strain	4.856
DRR006521	Root Winter glycyrrhizin high producing strain	3.132
DRR006522	Root Winter glycyrrhizin high producing strain	2.921
DRR006523	Root Summer glycyrrhizin low producing strain	4.973
DRR006524	Root Summer glycyrrhizin low producing strain	5.145
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.966
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.988

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.840
SRR2868004	Drought Stress (root)	16.657
SRR2967015	Control (root)	15.654

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.176
SRR9715740	Leaf	20.444
SRR9715741	Leaf	20.306
SRR9715739	Root	2.193
SRR9715742	Root	4.058
SRR9715743	Root	3.846

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.418
SRR8749028	MeJA induced 9h	3.814
SRR8749029	MeJA induced 9h	3.771
SRR8749030	Uninduced	4.414
SRR8749031	Uninduced	3.058
SRR8749032	Uninduced	5.126

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.968
SRR8400027	Control - Root	10.056