Gene detail

Gene detail information of Glyur000064s00005629

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12110.1	7.00E-179	nitrate transporter 1.1
NR	XP_007157339.1	0	hypothetical protein PHAVU_002G061900g [Phaseolus vulgaris]
COG	YP_002494545.1	2.00E-21	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
Swissprot	tr\|Q05085\|PTR7_ARATH	0	Protein NRT1/ PTR FAMILY 6.3
trEMBL	tr\|V7CIZ8\|V7CIZ8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW29333.1}

Sequence

Transcript Sequence

>Glyur000064s00005629.1
GTGCCACACTAACTCACTTAATTCCCTCTGTTATTGTACCATTTCACATATCACATCTCAAACCTGCAAAATGAGCACTCTCCCCACAACACAAGGGAAAACTATCCCAGATGCCTCCGACTACAAGGGCCGTCCAGCTGACAGGTCCAAAACCGGTGGTTGGGCTGCAGCCGCCATGATATTAGGAGGTGAAGTGATGGAGAGGTTGACAACACTGGGCATCGCCGTGAATTTGGTCACATATCTGACGGGCACGATGCATTTGGGAAATGCTGCCTCTGCCAACGTAGTCACCAACTTCTTGGGAACCTCCTTTATGCTCTGTTTGTTGGGTGGCTTTCTCGCCGATACTTTTCTGGGAAGATACCTCACCATCGCCATCTTCGCAGCCGTTCAAGCAACTGGTGTTACAATATTGACGATATCAACCATAATTCCGAGCCTACATCCTCCAAAATGCACGGAAGACAGGGTCCCACCCTGCGTACGAGCAAACAACAAGCAGTTACTGGTTCTGTATTTGGCGCTTTATGTAACGGCACTTGGTACGGGGGGTCTAAAATCCAGCGTGTCTGGGTTTGGGTCAGATCAGTTCGACGATTCCGATGAGGAGGAGAAGAAGCACATGATTAAGTTTTTCAACTGGTTCTACTTCTTCGTGAGCATAGGGTCTCTGGCAGCGACGACGGTTCTTGTGTACATTCAGGACAACCAGGGGAGGGGTTGGGGTTATGGCATCTGTGCCGGTGCTATTGTGGTGGCGCTTCTTGGGTTCTTGTGGGGTACCAGAAAGTACCGGTTCAAGCAACTTGTGGGTAGCCCTTTGACTCAGATTGCGGTGGTGTTTGTGGCTGCTTGGAGGAAGAGGCATTTGCAGTTGCCCTCTGATTCCTCGTTGCTCTTTAACGACGATGACATCGTACAGACCAAGAAGCAGAGGTTGCCGCATAGCAAGCAGTTCCGTAGCTTCTTGGACAAAGCTGCAATCAAGGACTCAGGAGGAAGTGGTGGAATCACGATGAAGACGAAGTGGTACCTTTCCACCTTAACAGATGTGGAAGAAGTAAAATTGGTAGTAAGGATGCTGCCCATATGGGCCACGACCATAATGTTTTGGACAATCCATGCTCAAATGACAACATTCTCGGTGTCACAAGCAACCACCATGGACCGCCACATCGGAAAATCATTCCAAATCCCGGCAGCATCAATGACCGTCTTCCTAATCGGAACCATTCTCCTAACGGTCCCCTTCTACGACCGCTTCCTTCGACCCATTGCAAGAAAAGTGCTCAACAACCCACATGGACTCACCCCTTTGCAACGCATAGGTGTTGAAATAAAGCGCATAACATTCGCGCGATCACATGGTTTTTTAAAAGATCCAACGGCCAAGATGCCAATGAGTGTGTTCTGGTTGATGCCACAATTCATCATTGTGGGGTCAGGGGAGGCCTTTATGTATATGGGGCAACTAGATTTCTTCCTTAGAGAATGTCCCAAAGGGATGAAAACCATGAGCACGGGGTTGTTTTTGAGTACACTGTCTTTGGGGTTTTTCTTTAGCTCATTATTGGTGACCATAGTGAACAAAATGACGGGTCCCACTAGGCCGTGGATTGCAGATAATCTTAACGAAGGGAGGCTCTATGACTTTTATTGGCTATTGGCTACACTGAGTGCTGTAAATGTGGTGATATACTTGGCTTGTGCTAAGTGGTATGTGTACAAGGACAAGAGACTTGCGGTGCAGGGCATAGAACTGGAAGAAACAGATGATGCTGCTACTTTCCACGCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00064	213886	217374	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0006857 oligopeptide transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000064s00005629.1	PF00854.16	PTR2	99	490	5.40E-82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.142
SRR1783600	control	0.142
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.021

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.132
DRR006522	Root Winter glycyrrhizin high producing strain	0.120
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.850
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.870

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.571
SRR2868004	Drought Stress (root)	205.294
SRR2967015	Control (root)	110.644

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.372
SRR9715740	Leaf	7.560
SRR9715741	Leaf	9.303
SRR9715739	Root	0.110
SRR9715742	Root	0.254
SRR9715743	Root	0.203

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.997
SRR8749028	MeJA induced 9h	31.607
SRR8749029	MeJA induced 9h	2.989
SRR8749030	Uninduced	0.806
SRR8749031	Uninduced	0.175
SRR8749032	Uninduced	0.429

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.708
SRR8400027	Control - Root	2.977