Gene detail information of Glyur000064s00005607 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56670.1 | 1.00E-21 | Ribosomal protein S30 family protein |
| NR | CDP14733.1 | 8.18E-36 | unnamed protein product [Coffea canephora] |
| Swissprot | tr|P49689|RS30_ARATH | 3.00E-28 | 40S ribosomal protein S30 |
| trEMBL | tr|A0A068V4G4|A0A068V4G4_COFCA | 3.00E-36 | Coffea canephora DH200=94 genomic scaffold, scaffold_91 {ECO:0000313|EMBL:CDP14733.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00064 | 121145 | 122746 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000064s00005607.1 | PF04758.9 | Ribosomal_S30 | 3 | 60 | 3.20E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1279.120 |
| SRR1783600 | control | 1283.894 |
| SRR1783602 | moderate drought stress | 982.100 |
| SRR1811619 | moderate drought stress | 979.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1261.905 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1251.396 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 701.674 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 683.885 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 761.808 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 772.493 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 377.118 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 376.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 506.113 |
| SRR2868004 | Drought Stress (root) | 387.533 |
| SRR2967015 | Control (root) | 422.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 267.726 |
| SRR9715740 | Leaf | 274.559 |
| SRR9715741 | Leaf | 220.087 |
| SRR9715739 | Root | 334.711 |
| SRR9715742 | Root | 426.441 |
| SRR9715743 | Root | 358.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 355.855 |
| SRR8749028 | MeJA induced 9h | 104.503 |
| SRR8749029 | MeJA induced 9h | 263.788 |
| SRR8749030 | Uninduced | 44.241 |
| SRR8749031 | Uninduced | 13.792 |
| SRR8749032 | Uninduced | 68.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 433.416 |
| SRR8400027 | Control - Root | 418.540 |