Gene detail

Gene detail information of Glyur000064s00005601

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16640.1	3.00E-94	Matrixin family protein
NR	XP_004511690.1	0	PREDICTED: metalloendoproteinase 1-like [Cicer arietinum]
COG	YP_006179981.1	2.00E-37	M10 family peptidase [Halobacillus halophilus DSM 2266]
Swissprot	tr\|P29136\|MEP1_SOYBN	4.00E-72	Metalloendoproteinase 1 (Precursor)
trEMBL	tr\|V7CGP1\|V7CGP1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW29289.1}

Sequence

Transcript Sequence

>Glyur000064s00005601.1
ATGTTTCCGTTTTTCAGTTACTGTAACTTCTTCTTCTTCTTCTTCTATGTGGCCCTCTTTCTTTGGCGCCCTTGCTTTCCCGCGAGGATTGTACCAGAATCCGTAACCGTAATAACCACCACCGAAAAGCACAACGCCACGTGGCACGACTTCTCGAAGTTCCTTCACGCCGAGAGGGGCAGCCAGGTAAGCGGCATGTCGGAGCTGAAGAAGTACTTCCACCGTTTCGGTTACCTCTCTCTGCCCGAAACGACGCCGAATTTCACGGACGCATTCGATTCACAGTTCGAGTCCGCCCTCGTCCTATTCCAGAAACGGCTCGGCCTTCCGGTCACCGGAAAACTCGACTNCGACACCATATCGACGATCGTGTCTCCGAGGTGCGGCGTCTCCGATGCTGCGACGAAAGGGATACACGCCACGCGTCACTACGCTTACTTCAACGGCAAGCCACGGTGGGTCCGCGGTTCACCGATGACTCTAACCTATGCCTTCTCACCGTACAACATGATCGACACGCTGAGCGTGCNGGAAATCCGAACGGTATTCGAGCGCGCCTTTGCGCGNTGGGCGTCGGTGATTCCGGTGAATTTCCGGGAGACGGAGCAGTACGAATCGGCGGATATTCGGATCGGGTTTTACCAGGGGGATCACGGTGACGGAGAGCCGTTTGATGGCGTTTTGGGGGTTTTAGCGCACGCGTTCTCCCCTCAGAGTGGGAGATTCCATTTGGATGCTGCCGAAACGTGGTCCGTTGACTTCGAACGCGATGAATCAAGGGTGGCCGTTGATTTGGAATCAGTGGCGACGCACGAGATAGGTCACGTGCTTGGGCTGGGCCATTCATCCGTGAAGGAAGCGGTGATGTACCCAAACCTGAGCCCCAGGAGGAAAAAGGTTGCCTTGAGGATTGATGACGTGGAGGGAGTCCAAGCTCTTTATGGCTCCAACCCCAACTTCTCTTTTAGTTCCTTGTTACAGTCTGAGGATTCCTCCAACATTGCTCTTGGGGCCCAAACCCGTTTATCTAAATGGACCTTCTCTTTCGCTCTTGCCTTGTTGATATTATTTTTGCGTGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00064	83382	84464	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0031012 extracellular matrix

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0008237 metallopeptidase activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000064s00005601.1	PF01471.13	PG_binding_1	66	121	7.70E-12
Glyur000064s00005601.1	PF00413.19	Peptidase_M10	160	315	8.30E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.696
SRR1783600	control	1.584
SRR1783602	moderate drought stress	4.264
SRR1811619	moderate drought stress	4.352

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.744
DRR006520	Root Summer glycyrrhizin high producing strain	1.598
DRR006521	Root Winter glycyrrhizin high producing strain	1.333
DRR006522	Root Winter glycyrrhizin high producing strain	1.079
DRR006523	Root Summer glycyrrhizin low producing strain	1.406
DRR006524	Root Summer glycyrrhizin low producing strain	1.367
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.872
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.823

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.971
SRR2868004	Drought Stress (root)	15.392
SRR2967015	Control (root)	19.904

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.845
SRR9715740	Leaf	2.564
SRR9715741	Leaf	5.174
SRR9715739	Root	5.350
SRR9715742	Root	3.788
SRR9715743	Root	3.408

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.865
SRR8749028	MeJA induced 9h	1.371
SRR8749029	MeJA induced 9h	0.777
SRR8749030	Uninduced	3.875
SRR8749031	Uninduced	1.978
SRR8749032	Uninduced	1.014

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.510
SRR8400027	Control - Root	6.723