Gene detail information of Glyur000064s00005597 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47380.1 | 3.00E-164 | Protein of unknown function, DUF547 |
| NR | XP_004512199.1 | 0 | PREDICTED: uncharacterized protein LOC101496607 [Cicer arietinum] |
| COG | YP_001998414.1 | 9.00E-12 | glycoside hydrolase 15-like protein [Chlorobaculum parvum NCIB 8327] |
| trEMBL | tr|G7JXC4|G7JXC4_MEDTR | 0 | Electron transporter, putative {ECO:0000313|EMBL:AES94281.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00064 | 48768 | 54446 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000064s00005597.1 | PF14389.1 | Lzipper-MIP1 | 100 | 183 | 1.40E-24 |
| Glyur000064s00005597.1 | PF04784.9 | DUF547 | 385 | 559 | 1.30E-27 |
| Glyur000064s00005597.2 | PF14389.1 | Lzipper-MIP1 | 100 | 183 | 1.30E-24 |
| Glyur000064s00005597.2 | PF04784.9 | DUF547 | 385 | 527 | 1.80E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.037 |
| SRR1783600 | control | 1.078 |
| SRR1783602 | moderate drought stress | 1.354 |
| SRR1811619 | moderate drought stress | 1.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.905 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.907 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.676 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.663 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.017 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.951 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.686 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.120 |
| SRR2868004 | Drought Stress (root) | 4.996 |
| SRR2967015 | Control (root) | 4.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.995 |
| SRR9715740 | Leaf | 1.635 |
| SRR9715741 | Leaf | 1.987 |
| SRR9715739 | Root | 0.155 |
| SRR9715742 | Root | 0.764 |
| SRR9715743 | Root | 0.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.018 |
| SRR8749028 | MeJA induced 9h | 1.379 |
| SRR8749029 | MeJA induced 9h | 0.311 |
| SRR8749030 | Uninduced | 0.436 |
| SRR8749031 | Uninduced | 0.137 |
| SRR8749032 | Uninduced | 0.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.954 |
| SRR8400027 | Control - Root | 2.811 |