Gene detail information of Glyur000064s00005596 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17340.1 | 5.00E-76 | tonoplast intrinsic protein 2;2 |
| NR | XP_004511697.1 | 6.49E-122 | PREDICTED: probable aquaporin TIP2-2-like [Cicer arietinum] |
| COG | YP_007795.1 | 2.00E-29 | tonoplast intrinsic protein (Aquaporin) [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q9FGL2|TIP23_ARATH | 6.00E-108 | Aquaporin TIP2-3, N-terminally processed |
| trEMBL | tr|R0H1E3|R0H1E3_9BRAS | 5.00E-114 | Uncharacterized protein {ECO:0000313|EMBL:EOA17308.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00064 | 41853 | 44440 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000064s00005596.1 | PF00230.15 | MIP | 14 | 104 | 4.80E-26 |
| Glyur000064s00005596.1 | PF00230.15 | MIP | 100 | 191 | 5.30E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.929 |
| SRR1783600 | control | 5.656 |
| SRR1783602 | moderate drought stress | 3.669 |
| SRR1811619 | moderate drought stress | 3.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.170 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.099 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.177 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.115 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.176 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.848 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1134.555 |
| SRR2868004 | Drought Stress (root) | 2846.083 |
| SRR2967015 | Control (root) | 1980.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.610 |
| SRR9715740 | Leaf | 1.005 |
| SRR9715741 | Leaf | 2.310 |
| SRR9715739 | Root | 18.481 |
| SRR9715742 | Root | 24.616 |
| SRR9715743 | Root | 22.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.355 |
| SRR8749028 | MeJA induced 9h | 10.988 |
| SRR8749029 | MeJA induced 9h | 5.316 |
| SRR8749030 | Uninduced | 0.273 |
| SRR8749031 | Uninduced | 0.310 |
| SRR8749032 | Uninduced | 0.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 132.617 |
| SRR8400027 | Control - Root | 67.264 |