Gene detail information of Glyur000063s00005889 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30900.2 | 5.00E-135 | DNAse I-like superfamily protein |
| NR | XP_004507739.1 | 0 | PREDICTED: uncharacterized protein LOC101488559 [Cicer arietinum] |
| COG | YP_001912100.1 | 5.00E-25 | endonuclease/exonuclease/phosphatase [Xanthomonas oryzae pv. oryzae PXO99A] |
| trEMBL | tr|I1JGP9|I1JGP9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G36540.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00063 | 393897 | 396893 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000063s00005889.1 | PF03372.18 | Exo_endo_phos | 1 | 226 | 1.90E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.613 |
| SRR1783600 | control | 33.901 |
| SRR1783602 | moderate drought stress | 32.701 |
| SRR1811619 | moderate drought stress | 33.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.263 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.242 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.134 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.711 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.158 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.715 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.720 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.120 |
| SRR2868004 | Drought Stress (root) | 26.442 |
| SRR2967015 | Control (root) | 21.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.009 |
| SRR9715740 | Leaf | 8.471 |
| SRR9715741 | Leaf | 10.786 |
| SRR9715739 | Root | 9.227 |
| SRR9715742 | Root | 10.617 |
| SRR9715743 | Root | 10.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.119 |
| SRR8749028 | MeJA induced 9h | 7.022 |
| SRR8749029 | MeJA induced 9h | 6.541 |
| SRR8749030 | Uninduced | 3.582 |
| SRR8749031 | Uninduced | 1.168 |
| SRR8749032 | Uninduced | 2.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.113 |
| SRR8400027 | Control - Root | 29.371 |