Gene detail information of Glyur000063s00005888 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10840.1 | 0 | Endomembrane protein 70 protein family |
| NR | XP_003527177.1 | 0 | PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max] |
| Swissprot | tr|F4KIB2|TMN8_ARATH | 0 | Transmembrane 9 superfamily member 8 {ECO:0000305} (Precursor) |
| trEMBL | tr|I1KDE2|I1KDE2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G28090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00063 | 389313 | 392751 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000063s00005888.1 | PF02990.11 | EMP70 | 59 | 608 | 2.50E-214 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.896 |
| SRR1783600 | control | 2.930 |
| SRR1783602 | moderate drought stress | 1.621 |
| SRR1811619 | moderate drought stress | 1.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.337 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.331 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.391 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.380 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.762 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.833 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.501 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.692 |
| SRR2868004 | Drought Stress (root) | 1.828 |
| SRR2967015 | Control (root) | 2.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.263 |
| SRR9715740 | Leaf | 0.307 |
| SRR9715741 | Leaf | 0.585 |
| SRR9715739 | Root | 0.754 |
| SRR9715742 | Root | 1.445 |
| SRR9715743 | Root | 1.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.734 |
| SRR8749028 | MeJA induced 9h | 0.470 |
| SRR8749029 | MeJA induced 9h | 0.378 |
| SRR8749030 | Uninduced | 0.169 |
| SRR8749031 | Uninduced | 0.139 |
| SRR8749032 | Uninduced | 0.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.524 |
| SRR8400027 | Control - Root | 8.360 |