Gene detail

Gene detail information of Glyur000063s00005883

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G30620.1	6.00E-61	Uncharacterised BCR, YbaB family COG0718
NR	XP_004507747.1	1.80E-105	PREDICTED: nucleoid-associated protein Synpcc7942_0464-like isoform X1 [Cicer arietinum]
COG	YP_001516133.1	1.00E-19	hypothetical protein AM1_1798 [Acaryochloris marina MBIC11017]
trEMBL	tr\|I3SKG9\|I3SKG9_LOTJA	1.00E-103	Uncharacterized protein {ECO:0000313\|EMBL:AFK40761.1}

Sequence

Transcript Sequence

>Glyur000063s00005883.1
CTAGGGATTTACTACTACTTGTTTGTGTCACACAATTGGTTAAAAACCGCGTCACCTAGTGTTCACTGTTCAATTCAATCTTCAACACAGTACACATAGGATAGGATAGATAGAAGCAAAGCAAAATATCTAATAGTCACCTACTTCCCCTTCACCCCCAATCGTCTCCAAACCCACACCACTTGCAACTTTTTCCCCTTCCCTTCTTCGCGTGGAAGCCAACAATGGCCTCCACTCTTTCTCTAACATGCCATTTATCAAACATCCACGGAACCAGTGAATGGAAAATGCTTTGCCCTTTATCCACTTCTCTCTGCAAACTAAGCCCCCGTGCAAATGTAGTTGATATGAGGCTATTATGTGGGCGTGGACGACAAACAGTTGGATCAGGCCATAGATGTTTCCGAGTTTATGCCCTTTTTGGAGGAAAAAAAGAAAATAGTGATGATGCACCTTCCAAGGGAGGAATGTTCGGAAACATGCAAAATCTTTATGAGACTGTGAAGAAAGCACAAAATGTTGTCCAAGTTGAATCAGCTCGAATACAGAAAGAACTTGCTGCAGCTGAGTTTGATGGTTACTGTGAGGGTGAGTTAATAAAGGTAACGCTATCGGGGAATCAGCAACCTGTACGCACGCAAATTACCGAGGCTGCTATGGAATTGGGATCAGAAAAACTTTCACTTTTAATCACAGAGGCTTACAAGGATGCACACCAGAAGAGTGTCCAGGCCATGAAGGAAAGGATGAGTGATCTTGCACAGAGCTTAGGGATGCCCCCAGGGCTCGGTGAAGGGTTGAAGTGATGACAATGAGATGAACCTCAATTTTGCATTACAAAAACCTTTTCAGAAATGCTTATTTTCTCCCTTTACCCTGATTTTGAATTAGCAGCAATCTTGTTTATTCAGTTGTGTACGGGATCACTTGAAATAGTGGTGGATCTTCTATTTCCCACCCCTACCCTTTTTCCTTGTCCCATTAACTTCTATACATACTATCATTGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00063	365302	369345	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000063s00005883.1	PF02575.11	YbaB_DNA_bd	94	185	1.40E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	52.161
SRR1783600	control	52.346
SRR1783602	moderate drought stress	40.133
SRR1811619	moderate drought stress	39.596

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.883
DRR006520	Root Summer glycyrrhizin high producing strain	54.975
DRR006521	Root Winter glycyrrhizin high producing strain	94.516
DRR006522	Root Winter glycyrrhizin high producing strain	92.160
DRR006523	Root Summer glycyrrhizin low producing strain	54.272
DRR006524	Root Summer glycyrrhizin low producing strain	54.366
DRR006525	Leaf Summer glycyrrhizin high producing strain	158.641
DRR006526	Leaf Summer glycyrrhizin high producing strain	157.182

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.198
SRR2868004	Drought Stress (root)	36.549
SRR2967015	Control (root)	56.436

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.444
SRR9715740	Leaf	94.748
SRR9715741	Leaf	58.734
SRR9715739	Root	17.894
SRR9715742	Root	24.982
SRR9715743	Root	19.593

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.599
SRR8749028	MeJA induced 9h	48.112
SRR8749029	MeJA induced 9h	71.943
SRR8749030	Uninduced	56.464
SRR8749031	Uninduced	34.738
SRR8749032	Uninduced	37.877

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.177
SRR8400027	Control - Root	48.985