Gene detail information of Glyur000063s00005877 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28088.1 | 9.00E-30 | Low temperature and salt responsive protein family |
| NR | XP_003519155.1 | 8.23E-44 | PREDICTED: UPF0057 membrane protein At4g30660 [Glycine max] |
| COG | YP_003585870.1 | 1.00E-07 | hypothetical protein ZPR_3358 [Zunongwangia profunda SM-A87] |
| Swissprot | tr|Q9SUI0|RC24_ARATH | 1.00E-35 | UPF0057 membrane protein At4g30660 |
| trEMBL | tr|C6SZC4|C6SZC4_SOYBN | 3.00E-44 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G36640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00063 | 347831 | 348726 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000063s00005877.1 | PF01679.12 | Pmp3 | 8 | 56 | 5.30E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 290.287 |
| SRR1783600 | control | 291.408 |
| SRR1783602 | moderate drought stress | 207.664 |
| SRR1811619 | moderate drought stress | 206.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 147.490 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 146.758 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 77.368 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 73.992 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 121.483 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 121.778 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 111.199 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 110.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 163.328 |
| SRR2868004 | Drought Stress (root) | 153.241 |
| SRR2967015 | Control (root) | 128.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 130.554 |
| SRR9715740 | Leaf | 135.971 |
| SRR9715741 | Leaf | 135.217 |
| SRR9715739 | Root | 125.747 |
| SRR9715742 | Root | 76.536 |
| SRR9715743 | Root | 85.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.372 |
| SRR8749028 | MeJA induced 9h | 59.137 |
| SRR8749029 | MeJA induced 9h | 61.405 |
| SRR8749030 | Uninduced | 43.572 |
| SRR8749031 | Uninduced | 31.417 |
| SRR8749032 | Uninduced | 27.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 156.480 |
| SRR8400027 | Control - Root | 147.832 |