Gene detail information of Glyur000063s00005876 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57900.1 | 6.00E-97 | SKP1 interacting partner 1 |
| NR | XP_003610294.1 | 0 | F-box protein SKIP1 [Medicago truncatula] |
| Swissprot | tr|Q9FDX1|SKIP1_ARATH | 3.00E-123 | F-box protein SKIP1 |
| trEMBL | tr|G7JFK8|G7JFK8_MEDTR | 0 | F-box SKIP1-like protein {ECO:0000313|EMBL:AES92491.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00063 | 342456 | 345580 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000063s00005876.1 | PF13516.1 | LRR_6 | 164 | 186 | 0.23 |
| Glyur000063s00005876.1 | PF00560.28 | LRR_1 | 263 | 278 | 0.14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.947 |
| SRR1783600 | control | 20.363 |
| SRR1783602 | moderate drought stress | 33.938 |
| SRR1811619 | moderate drought stress | 34.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.224 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.198 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.357 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.153 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.229 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.014 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.963 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.772 |
| SRR2868004 | Drought Stress (root) | 16.067 |
| SRR2967015 | Control (root) | 15.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.347 |
| SRR9715740 | Leaf | 10.195 |
| SRR9715741 | Leaf | 9.119 |
| SRR9715739 | Root | 13.254 |
| SRR9715742 | Root | 14.139 |
| SRR9715743 | Root | 16.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.478 |
| SRR8749028 | MeJA induced 9h | 6.283 |
| SRR8749029 | MeJA induced 9h | 3.821 |
| SRR8749030 | Uninduced | 3.799 |
| SRR8749031 | Uninduced | 4.057 |
| SRR8749032 | Uninduced | 3.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.218 |
| SRR8400027 | Control - Root | 19.744 |