Gene detail

Gene detail information of Glyur000063s00005868

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24060.1	3.00E-67	Translation initiation factor 3 protein
NR	XP_007154869.1	2.97E-124	hypothetical protein PHAVU_003G154700g [Phaseolus vulgaris]
COG	YP_007063619.1	1.00E-38	translation initiation factor 3 (bIF-3) [Calothrix sp. PCC 7507]
Swissprot	tr\|Q85G77\|IF3C_CYAME	8.00E-35	Translation initiation factor IF-3, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_00080}
trEMBL	tr\|V7CBY3\|V7CBY3_PHAVU	1.00E-124	Translation initiation factor IF-3 {ECO:0000256\|RuleBase:RU000646}

Sequence

Transcript Sequence

>Glyur000063s00005868.1
CCCAATCGGAGAGCGAGTGAAGAAAAATATTGTGGATAAGAGATAGTAGACCATGCGGCNAAGTTGAAGCGTGAAAGAAGGGTCTGAACTAAACGCCATGGCTGGCATCACCAGCGTCCCCTTCAAACTCAAACTCTTCCACCACCACAACAGCACAGCCTCGCCTCTCTTCTCTTCCTACAAACTCTTCGGCCTTTCCCTTTCTAATCCCTGTTCCCTCAGATTGAACTCTTATCTCTCCCTCTCCCTTCCCTCCGACGTAACCGTCCGTTACGGTGGTGGCTCCCGCCCTTCCTCCTACGGCGGCGACTCCAGGAGGCCCCAGAAAGGCCCCGACGATGACCAAGCTCTCGACCTATCCACCCTTAGGTCAGATACCGTGAGGCTTATCGATGAGAATCAGAATATGGTTGGAGTAGTGTCTACTGGTCAGGCCCTTCAAATGGCTGATGATGCTGAACTTGACTTGGTAATAGTATCACCAGATGCCGATCCTCCTGTTGTTAGACTAATGGATTACAGTAAATATAGATATGAACAGCAAAAGAAGAAAAGAGGACAACAGAAGAAAAGTGCTGCTAATCGGATGGATTTGAAGGAGCTCAAAATGGGATACAACATAGATCAACATGATTATTCTGTGCGTTTGAAAGCTGCACAGAAATTTTTGAAAGATGGTGACAAGGTTAAGATCATAGTAAACCTTAAAGGTCGTGAAAATGAATTCAGGAATATTGCTATTGAGCTTATTAGACGTTTTCAGAATGATGTTGGGAAGCTTGGAAAAGAGGAGGCTAAAAACTTCCGTGACAAGAACATCTTCATAATTTTGGTTCCAAATCAAGCTGCTGTACAGAAATCTCAAGAAACACCAAAGAAGAGAGACNAGTCTGCAGAAAATGAAGTCTCCATCAGTGTCGAAGCATAACTGAAAACTTCCATGCGAGATTCTAATTACAGAATGGATGGATTTTACGGGGCTCAAGGACTACATGTTCTATTGCGGTTGATTAGTGCTATGTTTGGATTGAAGTTGTAAAGTAATTTCAGCCCAAACACACGTCCCAAAGCAGCAAACAGAGAAGGAAGTATGCTCTTCATTTTAGAATGAATATACTTTGCCTTCCTGAATGGTAAAGCAAACAGGCTATAGATCTCTGTGGGTTGTATGCATTGAAGTTGTGCAATCATGGAGCGATGAAATTGTCTTTTTGCCCCATCATTTATAAATATGATGTGGGTTGCGCCACCTTGGAACAACAATAAATCTTGAATTTTTAAGACCAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00063	307046	312499	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006413 translational initiation

molecular_function
GO:0003743 translation initiation factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000063s00005868.1	PF05198.11	IF3_N	90	155	5.60E-27
Glyur000063s00005868.1	PF00707.17	IF3_C	164	248	3.80E-22
Glyur000063s00005868.2	PF05198.11	IF3_N	90	155	5.60E-27
Glyur000063s00005868.2	PF00707.17	IF3_C	164	248	3.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.422
SRR1783600	control	24.219
SRR1783602	moderate drought stress	29.651
SRR1811619	moderate drought stress	29.533

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.000
DRR006520	Root Summer glycyrrhizin high producing strain	31.318
DRR006521	Root Winter glycyrrhizin high producing strain	19.883
DRR006522	Root Winter glycyrrhizin high producing strain	19.190
DRR006523	Root Summer glycyrrhizin low producing strain	37.169
DRR006524	Root Summer glycyrrhizin low producing strain	36.995
DRR006525	Leaf Summer glycyrrhizin high producing strain	89.093
DRR006526	Leaf Summer glycyrrhizin high producing strain	88.239

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.850
SRR2868004	Drought Stress (root)	31.022
SRR2967015	Control (root)	29.728

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	114.492
SRR9715740	Leaf	170.250
SRR9715741	Leaf	130.017
SRR9715739	Root	7.139
SRR9715742	Root	25.168
SRR9715743	Root	16.871

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.137
SRR8749028	MeJA induced 9h	36.819
SRR8749029	MeJA induced 9h	40.795
SRR8749030	Uninduced	43.775
SRR8749031	Uninduced	40.721
SRR8749032	Uninduced	40.129

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.732
SRR8400027	Control - Root	34.180