Gene detail information of Glyur000063s00005865 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G24070.2 | 2.00E-74 | Family of unknown function (DUF566) |
| NR | KEH32614.1 | 0 | DUF566 family protein [Medicago truncatula] |
| Swissprot | tr|Q9SUH5|QWRF8_ARATH | 3.00E-180 | QWRF motif-containing protein 8 |
| trEMBL | tr|A0A072US23|A0A072US23_MEDTR | 0 | DUF566 family protein {ECO:0000313|EMBL:KEH32614.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00063 | 290368 | 296247 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000063s00005865.1 | PF04484.7 | DUF566 | 325 | 589 | 1.30E-94 |
| Glyur000063s00005865.2 | PF04484.7 | DUF566 | 325 | 537 | 2.60E-73 |
| Glyur000063s00005865.3 | PF04484.7 | DUF566 | 325 | 537 | 2.60E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.336 |
| SRR1783600 | control | 7.092 |
| SRR1783602 | moderate drought stress | 4.863 |
| SRR1811619 | moderate drought stress | 5.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.170 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.894 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.318 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.242 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.534 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.166 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.721 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.351 |
| SRR2868004 | Drought Stress (root) | 13.507 |
| SRR2967015 | Control (root) | 13.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.390 |
| SRR9715740 | Leaf | 8.318 |
| SRR9715741 | Leaf | 11.022 |
| SRR9715739 | Root | 3.128 |
| SRR9715742 | Root | 8.231 |
| SRR9715743 | Root | 7.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.331 |
| SRR8749028 | MeJA induced 9h | 28.276 |
| SRR8749029 | MeJA induced 9h | 36.613 |
| SRR8749030 | Uninduced | 27.722 |
| SRR8749031 | Uninduced | 58.144 |
| SRR8749032 | Uninduced | 53.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.379 |
| SRR8400027 | Control - Root | 13.416 |