Gene detail

Gene detail information of Glyur000063s00005858

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57830.1	8.00E-34	Protein of unknown function, DUF593
NR	XP_006575317.1	0	PREDICTED: uncharacterized protein LOC102661770 isoform X1 [Glycine max]
trEMBL	tr\|K7K9S5\|K7K9S5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G36766.1}

Sequence

Transcript Sequence

>Glyur000063s00005858.1
ATGGGAGAAACCAACATGGCTGAGAGTGATATAACAGCCATGAAGGAGACACTCCGTGCCCAACAGCAACTTCTGCAGCAGCTATACGCGGAGTTGGATCAGGAAAGAGAAGCCTCGGCAACCGCAGCNAGTGAAGCCATGGACATGATTCTGCGTTTGCAAGGAGAGAAGGCCGCGGTGAAGATGGAGTCAAGTCACTATAAGAGAATGGCAGAGGAGAAGATGGGTCATGCTGAGGCCACTCTTGAGGTTTTTGAAGAGCTCATGTATCAGAAGGAAATGGAAATTGCTTCTCTCGAGTTTCAAGTNCTCGCTTATAAAAACAAACTTCTGGCCTTGGGGTCTGATTTCAATGTCAGTGATTTTGAATTCCCTGAAGACCTGCTGCTCATGAGCAGAAATGATCAAAATAATGGAGAAAATGGTCAAAGTAGCACTGTGAGAAGACTAAGTTCATTACCCCCTATTCCATTGAAGAATACTTCAAGAGCTAGCAGAAAGAGAGATAGATCACCTAGTCCCTTTCCAGTTCCAGATGTGATTCCTANGTCAGTGGAAGGCAGGGACCAGGAAGTCACTTCGCCGAGCTTGGATTTGCCAAGAAAGTCGATAGACTTNACATATGGAACCCTTGATTCATACTGGAACCAGATCCAAAGCTTAGATCAAAAAGTGAAAGTGATTTCAGATTGNAAAGAATCAGGAAGTGAAGAATATACAAACCTGAGGAGTAGAAGAGGGAGANCATGTTCAATATTTTCACAAGCAAGCACTAAGATATCCGTTGACCAAACGGATAGACTACCTAATTCAGATAAAGCAAATNGCCGTGAAGGTACGCAAGATAGAGAAGCAGTTGCTAATCCTTCCTGCTCGGTTAATGTCTATGATGTATTTGAAGTCCCACAAACAAGTGNAAAGCATGAAGCCAGTGAACATGGGAAAAGAAGACTTGAGAAATGGATTTCAGATGTAGATAGCAGATTAACAAAACCAGACTCTATGTCTGAGGAAATCATNGAGTCAAATGTTAAACATGACATGGACAAACTAAAGAGCATGCTTAGCACACATCGTGAAATCAAAAGGACGAGTCCCAAAGATATGAAGGCCATTGCTTCGCAGAAAAAAGAAGGGATCGATGTGGACTGCAATGCTCAAGCTGAGTTTCAAAAATTGCATCAGAGAATTGATAGGCTTGAGAGGGAGAAAATCAATACAAGGCAAGAGATTAAGCNTGAAGGGGATGGGGAAGAACAGTTGAGGTTGTTGAAGGACATACATAGTCAACTCAAATTAATACAGTCAGAGATGAGAAGCTCNAAAACCGAAAAAGCTTCGCCTAAGGAGGATATTCCTTTGGGTCCTCTTCAAGAGGCAATGCTGTACTTTTGGATTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00063	235193	236713	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000063s00005858.1	PF04576.10	Zein-binding	13	103	2.20E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.697
SRR1783600	control	0.718
SRR1783602	moderate drought stress	0.721
SRR1811619	moderate drought stress	0.703

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.080
DRR006520	Root Summer glycyrrhizin high producing strain	1.028
DRR006521	Root Winter glycyrrhizin high producing strain	1.126
DRR006522	Root Winter glycyrrhizin high producing strain	0.996
DRR006523	Root Summer glycyrrhizin low producing strain	0.844
DRR006524	Root Summer glycyrrhizin low producing strain	0.945
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.198
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.197

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.973
SRR2868004	Drought Stress (root)	2.439
SRR2967015	Control (root)	2.168

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.262
SRR9715740	Leaf	0.158
SRR9715741	Leaf	0.120
SRR9715739	Root	0.114
SRR9715742	Root	1.107
SRR9715743	Root	0.878

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.574
SRR8749028	MeJA induced 9h	2.003
SRR8749029	MeJA induced 9h	1.864
SRR8749030	Uninduced	4.085
SRR8749031	Uninduced	1.435
SRR8749032	Uninduced	0.982

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.351
SRR8400027	Control - Root	2.534