Gene detail

Gene detail information of Glyur000063s00005851

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24090.1	1.00E-32	Ribosomal protein L35
NR	KHN30278.1	1.57E-69	50S ribosomal protein L35, chloroplastic [Glycine soja]
COG	YP_007168979.1	2.00E-16	50S ribosomal protein L35 [Halothece sp. PCC 7418]
Swissprot	tr\|P23326\|RK35_SPIOL	2.00E-41	50S ribosomal protein L35, chloroplastic (Precursor)
trEMBL	tr\|I1JGS8\|I1JGS8_SOYBN	6.00E-70	50S ribosomal protein L35 {ECO:0000256\|RuleBase:RU000568}

Sequence

Transcript Sequence

>Glyur000063s00005851.1
CCCGTATCTAAAAAACTATCACGGCCTTTGACAAAAAAAAAACTGTCACGGCCACACGAGTGAAAGTGAAAAGTGTTCTGTAACGGTAAATAAGGAAAAACGAAAAAGATCAAGGACGGTAACCCTGTGCCTTTATCCACAACAACCTTCCGAGTTGTGACAGAACAGAACCCACCCAAACCTCACACAAGGCACAAGAGCCACACACCAATCCACACCCCGAAATTCTGAAAGATGGCGTTGGCGTGTGCAACGGCTACGGTGTCCTTCGCCTTCAAACCTCTACCATCCTCTTCTTCTTCTTCTTCTTCTTCTACCCGTCTCTCCTACGGTTCAGTTCGATTTCCTTTGTCGAACAAAGCCAACTCGCTCAAACTCAGTTCGTCAGCCAGCATTTCCACTCCAATTCTTCACCAAAACCTCTGCACCATTACTCCTCCTCCTCGCTCTCTCACCATTGTATGCGCTAAAGGCTACAAAATGAAAACTCACAAGGCATCGGCAAAGCGATTTAGGGTGACGGGTGGAGGGAAAATCATGCGTAGGAGAGCTGGAAAGCAGCATTTGCTGGCCAAGAAGAATACCAAGAGGAAATTGCGACTCTCCAAACTGCACATGGTCAGCAGGAGTGACTACGACAATGTAATTGGAGCNTTGCCATATCTGAAAGTAAACAGAAAAGCTACATAGATGTCGCGTTTGCAAATCTGAGTCATAAGCCTAGCAGCGGTTTAGTCTATTGATTTGTGACGTCTCCAATATGCTTTTACACAATCTGAAAGTTGTTATATTTTTCAAATGAATTGAGGTAGTTTTTGCTATTTGAAATATCAGCACCTCGTGATAATGGTGCCTTTCCTGTATCATGTAACAATTTGTATTTACGTAATCGTATTGCAACTTATATTATTTAGTTTTTACCCGCTTCCTGCTTAGCATTGCAATTGTTTTGCAGGCTGTGTGGAATCTCGTGATCATTAATCTATTTTGTGAGGTGAGTTAAGAATATAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00063	204668	207455	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000063s00005851.1	PF01632.14	Ribosomal_L35p	81	139	7.40E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.190
SRR1783600	control	27.333
SRR1783602	moderate drought stress	17.045
SRR1811619	moderate drought stress	15.943

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.498
DRR006520	Root Summer glycyrrhizin high producing strain	24.647
DRR006521	Root Winter glycyrrhizin high producing strain	25.110
DRR006522	Root Winter glycyrrhizin high producing strain	23.358
DRR006523	Root Summer glycyrrhizin low producing strain	16.112
DRR006524	Root Summer glycyrrhizin low producing strain	15.609
DRR006525	Leaf Summer glycyrrhizin high producing strain	288.645
DRR006526	Leaf Summer glycyrrhizin high producing strain	286.503

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.720
SRR2868004	Drought Stress (root)	20.463
SRR2967015	Control (root)	17.907

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	154.971
SRR9715740	Leaf	193.319
SRR9715741	Leaf	125.618
SRR9715739	Root	17.179
SRR9715742	Root	14.588
SRR9715743	Root	14.078

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.259
SRR8749028	MeJA induced 9h	7.836
SRR8749029	MeJA induced 9h	9.353
SRR8749030	Uninduced	3.248
SRR8749031	Uninduced	2.199
SRR8749032	Uninduced	1.708

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.671
SRR8400027	Control - Root	37.730