Gene detail information of Glyur000063s00005849 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39440.1 | 1.00E-20 | |
| NR | AFK40297.1 | 2.02E-39 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SJ55|I3SJ55_LOTJA | 8.00E-40 | Uncharacterized protein {ECO:0000313|EMBL:AFK40297.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00063 | 200991 | 203044 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000063s00005849.1 | PF08615.6 | RNase_H2_suC | 25 | 84 | 1.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.171 |
| SRR1783600 | control | 14.703 |
| SRR1783602 | moderate drought stress | 21.070 |
| SRR1811619 | moderate drought stress | 20.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.218 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.621 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.964 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.665 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.519 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.908 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.509 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.785 |
| SRR2868004 | Drought Stress (root) | 18.056 |
| SRR2967015 | Control (root) | 18.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.768 |
| SRR9715740 | Leaf | 11.502 |
| SRR9715741 | Leaf | 6.730 |
| SRR9715739 | Root | 13.192 |
| SRR9715742 | Root | 11.006 |
| SRR9715743 | Root | 9.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.000 |
| SRR8749028 | MeJA induced 9h | 20.567 |
| SRR8749029 | MeJA induced 9h | 22.491 |
| SRR8749030 | Uninduced | 9.243 |
| SRR8749031 | Uninduced | 5.205 |
| SRR8749032 | Uninduced | 8.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.610 |
| SRR8400027 | Control - Root | 38.588 |