Gene detail information of Glyur000063s00005848 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30840.1 | 8.00E-114 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004507767.1 | 0 | PREDICTED: nucleoporin Nup43-like [Cicer arietinum] |
| Swissprot | tr|Q24JJ9|NUP43_ARATH | 1.00E-144 | Nuclear pore complex protein NUP43 {ECO:0000303|PubMed:21189294} |
| trEMBL | tr|G7JFH6|G7JFH6_MEDTR | 0 | Transducin/WD40 repeat protein {ECO:0000313|EMBL:AES92459.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00063 | 197884 | 200157 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.370 |
| SRR1783600 | control | 15.470 |
| SRR1783602 | moderate drought stress | 19.784 |
| SRR1811619 | moderate drought stress | 19.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.088 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.607 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.387 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.913 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.938 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.394 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.077 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.830 |
| SRR2868004 | Drought Stress (root) | 12.259 |
| SRR2967015 | Control (root) | 12.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.553 |
| SRR9715740 | Leaf | 11.723 |
| SRR9715741 | Leaf | 6.476 |
| SRR9715739 | Root | 23.485 |
| SRR9715742 | Root | 18.062 |
| SRR9715743 | Root | 18.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.191 |
| SRR8749028 | MeJA induced 9h | 14.107 |
| SRR8749029 | MeJA induced 9h | 12.739 |
| SRR8749030 | Uninduced | 2.433 |
| SRR8749031 | Uninduced | 1.641 |
| SRR8749032 | Uninduced | 2.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.377 |
| SRR8400027 | Control - Root | 26.280 |