Gene detail

Gene detail information of Glyur000063s00005841.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G23950.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_007154851.1	0	hypothetical protein PHAVU_003G152900g [Phaseolus vulgaris]
COG	YP_002763344.1	4.00E-19	putative protein kinase [Gemmatimonas aurantiaca T-27]
Swissprot	tr\|Q0WVM4\|Y2239_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At2g23950 (Precursor)
trEMBL	tr\|V7CC39\|V7CC39_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26845.1}

Sequence

Transcript Sequence

>Glyur000063s00005841.1
ACGGTGTGTGTGTGAGTGAGTGATGGACGTTTTGATTCTCGCGGGCTCCTTCACATGCTCCATGCTGTTCTGCAGTTCTGCCTCCACTCCTCACAGAGAAGAAAGAAAGAAAGAAAGAACAGTAGAGAGGGGTCATGCTATAGTCATGTTATATGTTTACCGGTCCTCATATAGTACGATCAGAGAGTAAGTAGTACCCACCCCACCCGCGTCTCTCTCATTTTTTGCACCCAAACCACGCCACAACTCCACCACTCTCCCACGCCTCTCTCTCTCTCTCTCTCTCTCCGCCTCTGCTTTTTAGTAGGCCGTTGGCGTTTTTGACGACGTCCTTCTCTTTCTGAAACAAAAGAAAAAAGAAACTCAACAATCGTTCCGTGGTTTTTGTTATGGCTCTCAACTTGGCTATTCTTCTTCTTCTCCTCATCTTCTTCTTCCTCTCCCGGGAGGCTCTCTGTTCCNCTTCCGAGCCTCGCAACCCCGAAGTGGAGGCTTTGATGGGCATAAAGGGAGCTCTGAATGACCCACACNGTGTGTTGAACAACTGGGACGAATTCTCTGTAGACCCTTGCAGTTGGACCATGATTACTTGCTCTTCTGATTACCTTGTTATAGGCCTGGGAGCGCCGAGCCAATCTCTCTCTGGAACTTTGTCTGCTGCAATTGGAAATTTAACAAATCTACGACAAGTGTTACTGCAGAACAACAATATCTCGGGCAAAATCCCACCGGAACTTGGAAACCTTCCCAAGTTGCAGACTTTAGATCTTTCCAANAACCGATTCTCCGGGTTGATTCCGGCCTCCCTGAGTCAATTAAATAGTCTCCAGAGGCTCAACAACAATAGCTTGTCTGGACCCTTTCCCGTTTCACTGGCCAAAACCCCACAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTTAGTGGACCATTGCCCAAGTTTCCAGCCAGTATTGTGGGGAACCCATTAGTTTGTGGAAGCAGCTCTACTGAAGGTTGCTCTGGATCAGCAACCCTTATGCCCTTTTTAACCCACATCTCATTTCCATTTATAGGAAAACACAAGTCCAAAAAACGACTAGCAATTGCATTTGGGGTCAGCTTTAGTTGTGCTTCCCTGATGGTCCTGTTTTTTGGGCTCTTTTGGTATAGAAGGAAAAGACAGCACGGAGCCATCCTGTATATCGGTGATTATAAGGAAGAGGGAGTTGTTAGCTTAGGGAATCTCAAAACTTTCACATTCAGAGAGCTCCAACATNCGACAGACAGTTTCAGCTCCAAGAATATACTTGGTGCTGGAGGCTTTGGCAATGTTTACAGGGGGAAGCTTGGAGATGGCACTATGGTAGCGGTGAAAAGGCTGAAAGATGTAAATGGTAGTGCTGGCGAATCACAGTTCCAAACAGAATTGGAGATGATCAGCTTGGCAGTTCACCGCAATTTACTTCGTTTAATTGGATATTGTGCTACTCCTAATGAAAAACTTCTAGTTTATCCTTATATGTCAAATGGCAGTGTGGCCGCCAGGCTTAGAGGTAAACCAGCTTTGGATTGGAACACAAGAAAGAGGATAGCAATTGGNGCTGCCAGGGGCCTTCTGTATCTTCATGAGCAATGTGATCCAAAGATAATACACAGAGATGTAAAGGCCGCCAACGTGCTTCTGGATGATGATTGTGAGGCTGTTGTTGGTGACTTTGGCCTTGCAAAGCTCCTTGATCATGCTGATTCCCATGTCACCACTGCTGTCCGTGGCACTGTTGGGCACATTGCACCGGAGTACCTCTCTACTGGCCAATCATCTGAGAAAACTGATGTATTTGGATTTGGCATTCTCTTGTTAGAACTTATAACTGGAATGACAGCTCTTGAGTTTGGGAAAACCGTGAATCAGAAAGGTGCTATGCTAGAGTGGGTTAGGAAAATACAGCAAGAAAAGAAGGTTGCCGTGTTGGTGGACAAAGAGCTAGGGAGCAACTATGATAGAATAGAGGTGGGGGAGATGCTACAAGTAGCTTTATTGTGTACTCAATATTTGACAGCCCACCGTCCCAGAATGTCTGAAGTGGTCCGAATGCTAGAAGGTGATGGGCTTGCTGAGAAGTGGGCATCAACACATAATTATGATAGTCACTGCTTGAACCCTAGTCACAGCAACAGTAGCAATAGCTCATCCCTCCCTACCTCTGCTTCAAAACATGANGACAATGTTCATGATCGTTCCAGCATGTTTGGCATGACAATGGATGATGATGATGAACAATCTTTGGATTCCTANGCCATGGAACTCTCTGGTCCTAGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00063	158759	163888	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000063s00005841.1	PF08263.7	LRRNT_2	30	69	4.50E-11
Glyur000063s00005841.1	PF12799.2	LRR_4	96	143	1.50E-08
Glyur000063s00005841.1	PF00069.20	Pkinase	297	517	7.40E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.499
SRR1783600	control	2.648
SRR1783602	moderate drought stress	6.187
SRR1811619	moderate drought stress	6.174

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.855
DRR006520	Root Summer glycyrrhizin high producing strain	5.720
DRR006521	Root Winter glycyrrhizin high producing strain	4.627
DRR006522	Root Winter glycyrrhizin high producing strain	4.352
DRR006523	Root Summer glycyrrhizin low producing strain	17.669
DRR006524	Root Summer glycyrrhizin low producing strain	17.316
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.427
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.402

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.271
SRR2868004	Drought Stress (root)	17.000
SRR2967015	Control (root)	20.096

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.355
SRR9715740	Leaf	1.925
SRR9715741	Leaf	2.472
SRR9715739	Root	1.654
SRR9715742	Root	7.139
SRR9715743	Root	6.373

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.020
SRR8749028	MeJA induced 9h	0.474
SRR8749029	MeJA induced 9h	0.907
SRR8749030	Uninduced	0.048
SRR8749031	Uninduced	0.019
SRR8749032	Uninduced	0.095

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.880
SRR8400027	Control - Root	7.254