Gene detail

Gene detail information of Glyur000063s00005834

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G30440.1	0	UDP-D-glucuronate 4-epimerase 1
NR	XP_003549520.1	0	PREDICTED: UDP-glucuronate 4-epimerase 1-like [Glycine max]
COG	YP_002890426.1	3.00E-112	NAD-dependent epimerase/dehydratase [Thauera sp. MZ1T]
Swissprot	tr\|Q9M0B6\|GAE1_ARATH	0	UDP-glucuronate 4-epimerase 1
trEMBL	tr\|I1MSX9\|I1MSX9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G07740.1}

Sequence

Transcript Sequence

>Glyur000063s00005834.1
ATGCCGTCATTGGAGGATGAGTTGTTCCCTTCAACACCAGGCAAGTTCAAGATCGAGCGAGCACACGGCATGAACCGTCAGGTCTACCGTTGCTTCGCTTCCACCAGCACCATGTTCTTGTGGGCCCTCTTCCTCATCGCCCTAACCGCTTCCTACCTCAGCTTCCAGGGCTTCGTCGATTCCGGTAGCCGGTACCTCTCCGCTTCCTGGGGCGGGATCCAGTGGGAGAAGCAGGTACGCACTTCCGCTCAGATCCACCGACAGGGAGGCATGTCTGTCCTTGTNACCGGCGCTGCCGGTTTCGTCGGGTCACACGTGTCACTCGCACTTAAGAGGAGAGGAGACGGCGTCGTTGGGCTCGACAACTTCAACGACTACTACGACCCATCCCTAAAGAAAGCACGCAAATCGCTCCTCGCAAGCCACGGCGTGTTCATCGTTGAAGGTGACGTCAACGACGCAAAGCTATTGGCTAAGCTCTTCGATGTGGTTGCATTCACGCACGTGATGCACCTCGCGGCTCAGGCNGGTGTAAGGTACGCTATGGAGAATCCTCACTCTTATGTCCACAGCAACATCGCTGGGCTCGTCACGCTCCTTGAGGCCTGTAAAACGGCGAACCCACAGCCCGCTATCGTTTGGGCCTCATCCAGTTCCGTTTACGGCCTNAACGAGAAAGTTCCATTCTCCGAATCGGATCGAACCGACCAACCCGCAAGCCTCTACGCCGCAACAAAAAAAGCCGGCGAGGAAATCACTCACACCTACAACCACATTTATGGACTCTCCATAACTGGTTTACGGTTCTTCACCGTTTACGGACCCTGGGGAAGACCTGACATGGCTTATTTTTCCTTCACCCGTAATATTCTTCAGGGAAAACCCATCACCGTTTACCGGGGAAAGAACCGGNTCGATCTGGCCCGGGATTTTACCTACATTGATGACATCGTGAAGGGATGTGTCGGGTCGTTGGATACTGCTGGGAAGAGTACCGGGTCGGGTGGGAAGAAGCGTGGAACTGCACCGTATCGGATCTTCAACCTTGGGAACACTTCGCCGGTGACTGTTCCGACGCTCGTGAGCATCCTGGAACGTCATTTGAAGGTGAAGGCGAAGAGGAATATAGTTGATATGCCTGGGAACGGTGACGTTCCGTTCACACACGCGAATATAAGTTCGGCCCGCAGGGAACTCGGGTACAAGCCCACAACCGATTTGCAAACCGGGTTGAAGAAGTTCGTGAAGTGGTACCTTTCCTATTACGGCTACAATCACGGCAATCCTGTAAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00063	98891	100186	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08679	E5.1.3.6	EC:5.1.3.6	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000063s00005834.1	PF01370.16	Epimerase	93	326	2.30E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	163.413
SRR1783600	control	143.885
SRR1783602	moderate drought stress	188.134
SRR1811619	moderate drought stress	188.948

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	657.464
DRR006520	Root Summer glycyrrhizin high producing strain	650.532
DRR006521	Root Winter glycyrrhizin high producing strain	687.375
DRR006522	Root Winter glycyrrhizin high producing strain	673.175
DRR006523	Root Summer glycyrrhizin low producing strain	1208.476
DRR006524	Root Summer glycyrrhizin low producing strain	1144.071
DRR006525	Leaf Summer glycyrrhizin high producing strain	229.329
DRR006526	Leaf Summer glycyrrhizin high producing strain	230.463

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	159.394
SRR2868004	Drought Stress (root)	189.745
SRR2967015	Control (root)	520.545

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	695.474
SRR9715740	Leaf	437.055
SRR9715741	Leaf	474.454
SRR9715739	Root	1165.816
SRR9715742	Root	1471.630
SRR9715743	Root	1329.635

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	805.419
SRR8749028	MeJA induced 9h	1282.127
SRR8749029	MeJA induced 9h	1053.824
SRR8749030	Uninduced	929.180
SRR8749031	Uninduced	449.331
SRR8749032	Uninduced	777.523

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	202.634
SRR8400027	Control - Root	373.405