Gene detail information of Glyur000063s00005826 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G22450.1 | 5.00E-36 | cytochrome C oxidase 6B |
| NR | KHN17535.1 | 7.00E-48 | Cytochrome c oxidase subunit 6b-1 [Glycine soja] |
| Swissprot | tr|Q9S7L9|CX6B1_ARATH | 7.00E-45 | Cytochrome c oxidase subunit 6b-1 |
| trEMBL | tr|A0A068U308|A0A068U308_COFCA | 7.00E-48 | Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313|EMBL:CDP02891.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00063 | 65631 | 68436 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000063s00005826.1 | PF02297.12 | COX6B | 14 | 71 | 7.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 49.910 |
| SRR1783600 | control | 50.011 |
| SRR1783602 | moderate drought stress | 22.853 |
| SRR1811619 | moderate drought stress | 22.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 62.729 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 62.581 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 36.908 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.782 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.204 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 34.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 50.747 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 50.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 251.343 |
| SRR2868004 | Drought Stress (root) | 195.712 |
| SRR2967015 | Control (root) | 155.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 106.395 |
| SRR9715740 | Leaf | 92.411 |
| SRR9715741 | Leaf | 102.068 |
| SRR9715739 | Root | 54.977 |
| SRR9715742 | Root | 54.628 |
| SRR9715743 | Root | 51.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.756 |
| SRR8749028 | MeJA induced 9h | 51.476 |
| SRR8749029 | MeJA induced 9h | 78.860 |
| SRR8749030 | Uninduced | 87.743 |
| SRR8749031 | Uninduced | 96.877 |
| SRR8749032 | Uninduced | 78.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 146.893 |
| SRR8400027 | Control - Root | 179.952 |