Gene detail

Gene detail information of Glyur000063s00005824

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28040.5	2.00E-58	nodulin MtN21 /EamA-like transporter family protein
NR	XP_003549516.1	2.59E-140	PREDICTED: LOW QUALITY PROTEIN: WAT1-related protein At4g28040-like [Glycine max]
Swissprot	tr\|Q9SUD5\|WTR36_ARATH	8.00E-74	WAT1-related protein At4g28040
trEMBL	tr\|I3S1M2\|I3S1M2_LOTJA	9.00E-129	Uncharacterized protein {ECO:0000313\|EMBL:AFK34164.1}

Sequence

Transcript Sequence

>Glyur000063s00005824.1
ATGGGTGGTTATGTTACAGTAATGGGTATGATGGGGTTACAATTTCATTATGCAGTGCTTGCAATCTTTACAAGAGCTGCTCTATTAGATGGGTTGACTCCAACGGTGTTTGTAGCATATAGGCAAGGCATAGCCACTTTGGCATTGGCGCCTATGATTTTTTCCCCTAAGCGGATACGATATTTTAAGTCTTCACTCGGACTAAGAAGTTTGTCTTTGATGTTTGTCACCTCTCTTATTGGGGTTACGGCAAATCAGAATGCATATTTTCAAGGCTTATACTATGCATCTTCTACAGCAGCCACCGCAATGAGTAATTTGATACCCGCATTTACTTTTGTAATTGCAGCAATTTTGGGATTTGAGAAATTCGATCTTCGAAGTATAAGAAGCATGGCCAAGATACTAGGGACAGTAAATAAAAACCAAACCAGAATCAATCAACCTTGGGATGTTGTTCTTATTGTACCCCATCAATGGAGATCTGATTTGACTTCAAATATAGCCATATTTGCACTGCTCTTTGAGCAGGATCTTCAAGCATGGATCTTACCTTCACCTCTACAACTTTCTTGCTGTTTATATGCAGGAATAGGAATTGCGGTTAGCTTCTTCATTCAATCCTGGTGCATCTCAGAAAGAGGTCCCCTGTACTGTGCAATGTTCAACCCTCTAGCAACAGTCATCACAGCTTTNATATCTGCTACATTCCTAAAGGAAGAGCTATACGTTGGAAGTTTGATAGGGGCTGTTGGGGTGATAACTGGTTTATATATAGTGCTATGGGGTAAAGCCAAAGATTTTGAAGGGAGTAAACAAGAGGCACCNCAGTCAAATATGCAGGATGATGAGATAATAAGCAGTAGGATAGATTTGGAAGAACCACTTCTGTCAGAGAAGTCAGAACATGTAGCAGAAAGCAACATGAAGATGGAGCCATGATGTGATGACTAAACCGATATGATAGATAGTTTTGGTGAAACTTGATCACTCCCGAATTGAAGAAATGAAAAAAGGAATGAATTGCAAGTGGCAACTTAATTAAAGAAGATAGGCTTAGTTTCTTTCACCAAAATTTCTAATGAAGGGAACGGGAGAATAAATTCAAGATCATGTCCTGAACATATAGTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00063	55962	58403	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000063s00005824.1	PF00892.15	EamA	17	129	6.70E-10
Glyur000063s00005824.1	PF00892.15	EamA	169	261	2.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.217
SRR1783600	control	0.339
SRR1783602	moderate drought stress	0.100
SRR1811619	moderate drought stress	0.274

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.966
DRR006520	Root Summer glycyrrhizin high producing strain	0.977
DRR006521	Root Winter glycyrrhizin high producing strain	2.134
DRR006522	Root Winter glycyrrhizin high producing strain	1.952
DRR006523	Root Summer glycyrrhizin low producing strain	0.159
DRR006524	Root Summer glycyrrhizin low producing strain	0.194
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.268
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.101

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.770
SRR2868004	Drought Stress (root)	33.032
SRR2967015	Control (root)	23.752

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.962
SRR9715740	Leaf	31.643
SRR9715741	Leaf	38.740
SRR9715739	Root	0.000
SRR9715742	Root	0.128
SRR9715743	Root	0.081

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.799
SRR8749028	MeJA induced 9h	22.649
SRR8749029	MeJA induced 9h	8.118
SRR8749030	Uninduced	17.911
SRR8749031	Uninduced	22.879
SRR8749032	Uninduced	12.552

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.716
SRR8400027	Control - Root	0.220