Gene detail

Gene detail information of Glyur000063s00005820

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57800.1	0	Fatty acid hydroxylase superfamily
NR	XP_003542310.1	0	PREDICTED: protein ECERIFERUM 3-like [Glycine max]
COG	YP_432879.1	5.00E-12	sterol desaturase [Hahella chejuensis KCTC 2396]
Swissprot	tr\|Q8H1Z0\|CER3_ARATH	0	Protein ECERIFERUM 3
trEMBL	tr\|I1LVW7\|I1LVW7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G01560.1}

Sequence

Transcript Sequence

>Glyur000063s00005820.1
CAGAGCGATAAAGTTTCCCCTTAAAAAGGAAGGGATAATTTCTTACAGAAACGAACCTATCCCATTGGTTGCTCTTCCTTTCTCATATTCTTATTGGGTATTGGAATTCCTTTCCGGTTACTGCTTATAGATTTCTCGGACTCTATTGGTGTTTCAGTGAGTGCCTAAAAAAAAAAAGAAAGAAATTAGGTGGCTACTAGAAGAAGCATCAGTGCCATTTAACAAGGGAAAAAAACGAGTAGTGGAAGATTTCAGTGNAGTGAAAAAATGGGTGGTGCTCCTTTATCAACCTGGCCATGGGAGAACTTTGGAATATTCAAGTATCTATTATATGGGCCTTTTGTGGCGAAAGTGGTGTACGGAATGTTGTATGGCGATGAACAATCAAAATCCAACCTGAGCTGGTGCCTTCATTTGCTCATCCTATGTGGTCTCAGAGGTTTAATTCATTTGCTCTGGAGTTCTTATAGTAACATGCTTTTTCTCACTAGAAATCGACGAATTGTTCAACAGGGTGTTGATTTCAAGCAGATTGACAAAGAATGGGACTGGGACAATTTCTTGATTCTTCAGGCACTAGTTGCCTCCATGGCTTGCCTTATGTTTCCATCTCTTCAACATCTCCCTCTCTGGAATGTGAAAGGTCTTATTGCTGCTGTGATGCTCCATGTGGGTGTCTCAGAGCCACTTTATTATTGGGTACATAGGAGGTTCCATGGAGATTATCTTTTCACCCACTATCACTCACTTCATCACTCATCTCCAGTACCAGCTTCTTTTACTGCTGGAAACGCAACACTATTGGAACATCTTATTTTGACGGTAATCATTGGGATCCCAGTCTTTGGGGCTTATTTGATGGGATATGGATCAGCAGGCTTGGTGTATGGTTATGTGTTGATTTTTGATTTCCTGAGATGCTTGGGTCACTGCAATGTTGAAATAGTCCCACATGGGTTGTTCCAGACATTTCCGTTCCTTAGATATGTGATTTACACACCAACATATCACCACCTACACCACACTGATAAGGACACCAATTTCTGCCTCTTTATGCCTCTCTTTGACGCCCTAGGCAATACACTTAACAGAAAGTCATGGCAATTACACAAAACAATGAGTTCAGGCTCAGGGGACGGCGTTACGGTACCGCATTTTGTTTTCCTGGCCCATATAGTTGATGTCTCAGCGTGTATGCATGTCCCCTTTTTCCTGCGATCCGTTTCTTCNTTGCCATACGCAACAAGGCTCTTCCTGCTCCCATGTTGGCCCGTGGCCTTTATAATTTTGCTGGCCATGTGGGTTTGGTCCAAAACCTTTNTAGTTACTTTCTACTACCTCAGAGGTCGACTCCACCAAACATGGAGTGTACCCAGATGCGGTTTTCAGTATTTCTTGCCATTTGCTGCTGATGGAATCAATAATCAAATTGAGCAAGCTATCCTCATGGCCGATAGAATTGGGGTTAAAGTCATTAGCCTCGCTGCATTGAACAAGAATGAGTCCCTAAATGGGGGTGGAAAGCTATTTGTGGACAAGCACCCAAACCTTCGGGTTCGAGTTGTTCATGGGAACACCTTAACTGCTGCTGTCATTCTCAATGAGATCCCTCGAGATGTGAAAGAGGTGTTCCTAACAGGAGCTACTTCCAAGCTTGGAAGAGCAATTGCACTCTACCTTTGCCAAAAGAAAGTCAGAGTTCTGATGTTGACTCTTTCAACGGACAGATTTCAGATGATTCAAAAGGAAGCCCCTCTTGAATACCAAAGCTACCTTGTCCAAGTCACAAAATACCAAGCAGCNCAGAAGTGCAAGACCTGGATTGTTGGAAAGTGGATCACTCCAAGAGAGCAGAGCTGGGCGCCACGTGGCACCCATTTTCATCAATTTGTTGTCCCAAACATTTTACCCTTCAGAAGAGACTGCACTTATGGTGATCTAGCAGCCATGAGATTACCAGAAGACGTGGAAGGCCTTGGCTGCTGTGAGTACACGATGGAGAGGGGAGTAGTTCACGCATGCCATGCAGGAGGAGTGGTACATAGTCTTGAAGGTTGGTCTCATCACGAAGTTGGGGCCATAGATGTTAAAAGGATCGATCTTGTGTGGCAAGCAGCTCTCAAACATGGCCTAAGGCCAGTTTCAAGTCAACACTAGTAGTGAAATTAAGAAATTTGACATCTTTGTCAAGTTTCTTTCTAAAGTTTCTGGCTTATGTGTTTTGGTATACACTGCAAACCATCTCAGTGTGGTTATTTTCGTTAAAAGTCGCTTTACTAAATTATTTAATGGTTCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00063	12734	19854	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000063s00005820.1	PF04116.8	FA_hydroxylase	132	253	7.50E-12
Glyur000063s00005820.1	PF12076.3	Wax2_C	454	624	9.80E-65
Glyur000063s00005820.2	PF04116.8	FA_hydroxylase	132	253	6.20E-12
Glyur000063s00005820.2	PF12076.3	Wax2_C	388	558	8.00E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.614
SRR1783600	control	3.584
SRR1783602	moderate drought stress	6.801
SRR1811619	moderate drought stress	5.140

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.310
DRR006520	Root Summer glycyrrhizin high producing strain	10.842
DRR006521	Root Winter glycyrrhizin high producing strain	1.669
DRR006522	Root Winter glycyrrhizin high producing strain	1.614
DRR006523	Root Summer glycyrrhizin low producing strain	13.225
DRR006524	Root Summer glycyrrhizin low producing strain	12.956
DRR006525	Leaf Summer glycyrrhizin high producing strain	56.253
DRR006526	Leaf Summer glycyrrhizin high producing strain	56.165

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.984
SRR2868004	Drought Stress (root)	28.300
SRR2967015	Control (root)	29.408

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.160
SRR9715740	Leaf	43.657
SRR9715741	Leaf	31.406
SRR9715739	Root	0.986
SRR9715742	Root	3.350
SRR9715743	Root	2.681

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.543
SRR8749028	MeJA induced 9h	1.720
SRR8749029	MeJA induced 9h	0.256
SRR8749030	Uninduced	0.755
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.144

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.724
SRR8400027	Control - Root	4.184