Gene detail information of Glyur000062s00005500 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02100.1 | 3.00E-10 | low-molecular-weight cysteine-rich 69 |
| NR | ACN93800.1 | 1.16E-43 | defensin precursor [Vigna unguiculata] |
| Swissprot | tr|Q40901|DEF_PETIN | 2.00E-31 | Defensin-like protein (Precursor) |
| trEMBL | tr|C1K3M7|C1K3M7_VIGUN | 4.00E-44 | Defensin {ECO:0000313|EMBL:ACN93800.1} (Precursor) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00062 | 385307 | 386588 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000062s00005500.1 | PF00304.15 | Gamma-thionin | 32 | 78 | 5.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 231.486 |
| SRR1783600 | control | 231.362 |
| SRR1783602 | moderate drought stress | 234.993 |
| SRR1811619 | moderate drought stress | 234.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1667.278 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1625.966 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7105.121 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6823.513 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 463.165 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 458.006 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 228.470 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 225.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 431.088 |
| SRR2868004 | Drought Stress (root) | 475.219 |
| SRR2967015 | Control (root) | 479.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 555.660 |
| SRR9715740 | Leaf | 320.547 |
| SRR9715741 | Leaf | 328.695 |
| SRR9715739 | Root | 1550.209 |
| SRR9715742 | Root | 1439.436 |
| SRR9715743 | Root | 1395.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1433.007 |
| SRR8749028 | MeJA induced 9h | 1585.706 |
| SRR8749029 | MeJA induced 9h | 1268.443 |
| SRR8749030 | Uninduced | 1024.615 |
| SRR8749031 | Uninduced | 497.241 |
| SRR8749032 | Uninduced | 2802.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3214.208 |
| SRR8400027 | Control - Root | 2624.089 |