Gene detail

Gene detail information of Glyur000062s00005492

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20300.2	1.00E-38	Protein of unknown function (DUF1639)
NR	XP_007156293.1	6.01E-118	hypothetical protein PHAVU_003G274400g [Phaseolus vulgaris]
trEMBL	tr\|V7CDM9\|V7CDM9_PHAVU	2.00E-118	Uncharacterized protein {ECO:0000313\|EMBL:ESW28287.1}

Sequence

Transcript Sequence

>Glyur000062s00005492.1
CATAAACTCTCTTCTTATATATAATAACTCCTCACTGCACTGTACTTCACTGTATTCCCCCTTTTTCTCTGCGGTAGAAGAAACAATTCCATTCTTCATTCTCATTCCTAATAATTGTTTGTTTGGAGCAACCAACAACACAATCATTCATGAGGGTTACGAGTTTGAGGAATGAAAAAATTGGAATAAAAGGGAGCATCATGGGTAGCACATGCAAGCAGGGTTTGGAATAGATAGAAAAAGTAGAGGAATAATAACATTAATAATAATAATAAGCACAAGACAATACAAAATTCACAAATGCAACAAAGATGAGTAGCAGCAATATCTGTATCTCTCTGTTGTGGTGGTTTTGAAAGCAAAAAGGTTTTGAGATTCATTTTGTGAGAAGCAAAGAAAGAAAACACAACAACANCAACAACATGTCCCGTTTTGATTCTCCTCAGACAACTGAGACAAGTCACAGCACCAGTCCAAGTGGGAGTGGTGGTGATGTGCTGTTGAAGTGGGGTCACAGAAAGAGATCAAGGGTCTCCAGAGCTGCCATTGAAGATTCATCCTCTTCTGTTCATGCCAAGCAAAGGAAAGTAGTTCCTCCTGCTGCCCCTCAAGCTGCAAAGTTTCCCTCTGCATCCATGCCGCCGCCGCCGCCGCCGCCGCCGCTTGTTTCTTCTGCTGCCTCCAATGGCAGAGGTAGAAAAGATAGCCCTAGGAATATGGAAGATCCCTCTGCAGCTGGAAGTGAATCACCTTCAAGAAACAGTAATGGCAGCAACCCANTTGTTTCTAGATCTGCAGCACAAAAACTGTCTCCTTCTGGAATTGAAAGAAGTAANAGAAGGATGCCTCCTTCTTCTGGATCAGCAAAGGGTCAGAAACCAAGTGGATCTTCAACAACACAAGCCTCTGAGAGACTGAATAATCATGGTGATTCTGCTTCAATGCAATCTGGACAGGAAGGCCGGGTTCTCACTGCTCCTGTAGAGGCAATTGAGTGGCCAAGGATATACCTTTCTCTTTCAAGAAAGGAGAAAGAAGATGACTTTCTTGCCATGAAAGGGACAAAAATCCCTCAAAGACCAAAGAAGAGAGCAAAGAACATTGACAGAACTCTGCAGTACTGTTTTCCTGGGATGTGGCTATCAGATCTGACAAAGAGCAGATATGAGGTTAGGGAGAAGAAGTCTGTGAAGAAGCAAAAGCGCAGAGGCTTGAAAGGAATGGAAAACTTGGAAAGTGATTCCGAGTAGCAGCAGCACATAACGTAATTTTTTTTTATTTTTCCATTCAAAGCTAGGTAGGTGGGTGAGAATTAAAAACTCATTACATGAAGAAGTGNCTTTCTTTTCTTTTTTAAAAGTCTTTACAGAGAGCTGTTGCTGTTGGTAGTATAGTATATGACATTACTTAAAAGTAGGTTTCACTGGGTCCCCTCACTTCATTACCTTGGTATTGTAGTAGTTGGGCTCACATTACCAGTGGTCTTGTTGTAGCCCATTTTATTGACATGGAAGCCAATATACCTGGCAGCTCTGAAGAGTGAAGACCACTCATTCTCATTCATATCTGTGGGGCCCTTCAGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00062	333376	336865	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000062s00005492.1	PF07797.9	DUF1639	199	248	2.30E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.512
SRR1783600	control	2.514
SRR1783602	moderate drought stress	3.235
SRR1811619	moderate drought stress	3.145

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.539
DRR006520	Root Summer glycyrrhizin high producing strain	7.869
DRR006521	Root Winter glycyrrhizin high producing strain	7.907
DRR006522	Root Winter glycyrrhizin high producing strain	7.491
DRR006523	Root Summer glycyrrhizin low producing strain	6.661
DRR006524	Root Summer glycyrrhizin low producing strain	5.401
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.873
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.883

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.681
SRR2868004	Drought Stress (root)	7.043
SRR2967015	Control (root)	6.157

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.358
SRR9715740	Leaf	1.464
SRR9715741	Leaf	0.892
SRR9715739	Root	1.373
SRR9715742	Root	2.735
SRR9715743	Root	2.167

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.862
SRR8749028	MeJA induced 9h	11.589
SRR8749029	MeJA induced 9h	11.310
SRR8749030	Uninduced	3.448
SRR8749031	Uninduced	2.471
SRR8749032	Uninduced	4.299

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.918
SRR8400027	Control - Root	7.325