Gene detail information of Glyur000062s00005486.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56180.1 | 1.00E-154 | actin-related protein 8 |
| NR | XP_003547865.1 | 0 | PREDICTED: actin-related protein 8-like [Glycine max] |
| COG | YP_003266114.1 | 6.00E-18 | actin/actin family protein [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q9FKT0|ARP8_ARATH | 0 | Actin-related protein 8 |
| trEMBL | tr|I1MMQ7|I1MMQ7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G19540.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00062 | 219924 | 226263 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000062s00005486.1 | PF12937.2 | F-box-like | 42 | 81 | 2.60E-08 |
| Glyur000062s00005486.1 | PF00022.14 | Actin | 173 | 426 | 2.70E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.992 |
| SRR1783600 | control | 10.851 |
| SRR1783602 | moderate drought stress | 15.176 |
| SRR1811619 | moderate drought stress | 15.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.183 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.366 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.934 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.969 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.148 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.612 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.376 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.822 |
| SRR2868004 | Drought Stress (root) | 21.616 |
| SRR2967015 | Control (root) | 19.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 57.519 |
| SRR9715740 | Leaf | 47.503 |
| SRR9715741 | Leaf | 65.221 |
| SRR9715739 | Root | 10.849 |
| SRR9715742 | Root | 22.361 |
| SRR9715743 | Root | 19.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.606 |
| SRR8749028 | MeJA induced 9h | 7.563 |
| SRR8749029 | MeJA induced 9h | 4.323 |
| SRR8749030 | Uninduced | 11.850 |
| SRR8749031 | Uninduced | 4.047 |
| SRR8749032 | Uninduced | 3.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.891 |
| SRR8400027 | Control - Root | 16.589 |