Gene detail

Gene detail information of Glyur000062s00005484

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26470.1	9.00E-96	Calcium-binding EF-hand family protein
NR	XP_004509621.1	9.51E-157	PREDICTED: probable calcium-binding protein CML21-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q52K82\|CML21_ARATH	2.00E-120	Probable calcium-binding protein CML21
trEMBL	tr\|G7LJD2\|G7LJD2_MEDTR	2.00E-153	Uncharacterized protein {ECO:0000313\|EMBL:AFK43589.1}

Sequence

Transcript Sequence

>Glyur000062s00005484.1
AAATAATTGTGAAAGGAGGAAAAAAATGGGCATAGATCTCAAAAGACGATACGTGGTGGGAGCAGCACAAACATAGGNTGAGACACATGAAGAGACCCTGACTCAGTTTTTAACAATTAACAAACACACACCACTTTCCCCCATCCAATTCCATCCTATGTTTGGAATTTCTATATTCATATTCACATTCATACTCAACCCAACCCTCCTTCCTTCCTTTCTCTTCCAAAAGCCAAACAACCACTTTTGTTNTCGTTTGGTTTCACCAGTTTGGGTTATTGGATCCCCACTTACTCCTCTTCACTTTCAATAACAAGGAGCTTGGCAACTCCTGCTCCTTCTTCTCCCTCATCATCATCATCATCATATATAAAGGGTACCAGAGGCACCAATTTCTGAAGCCTGCTTTGGTTAGTTGAATTGGCAATTATGGGAGGTGCAATAGGAAAGGGTGAATCACCCAAAGCGTCTTGGATACCAGAAACCAAGCTTGAGGCTAAGATGGTTGAAGCAATGCAGAGGAGGGAATCTCAGGGAAGTTCTGTGAAATCGTTCAACACTATAATCTTGAAATTCCCAAAAATTGATGAGAGCTTCAGAAAATGCAAAGCCATCTTTGAGCAGTTTGATGAGGATTCTAATGGGGCAATAGATCAAGAAGAGTTGAAGAAGTGTTTCAGTAAGCTGGAGATTTCTTTTTCTGAGGAAGAGATCAATGATCTTTTTGAAGCATGTGATATTAATGAGGATTTGGGAATGAAGTTCACTGAGTTTATTGTTCTTCTCTGCCTTGTCTACCTTCTCAAGGATGACCCAGCAGCACTTCATGCTAAATCGCGAATTGGGATGCCAAATCTGGAGGCCACTTTTGAGACTTTGGTTGACACATTTGTGTTCTTAGACAAGAATAAGGATGGATATGTCAGCAAAAGTGAAATGGTCCATGCTATAAATGAAACTACNTCAGGGGAGCGTTCTTCCGGAAGAATCGCTATGAAAAGATTTGAAGAAATGGATTGGGATAAAAATGGAATGGTGAACTTTAAGGAGTTTCTTTTCGCATTTACACGGTGGGTTGGAATTGATGAATTTGAGGATGAGGAAAATGCAGAGGCCTCCTGAATCATGTCATAGCTTGTAGCAGCATAGTGTTTCAGCCCACACAAGCAAAAAAAAAAAGGCTTTTCCGGTTTTCACTTGCAATAAAGGCCTAGTTGCATTCACGTTGAATTTTTATTTTTAATGATTTTATCATTCCTGATTGTAAATAGTATAAGTGTAGAACTAAGTGNCATATTATTGAAGATGTATTCAAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00062	199583	203758	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000062s00005484.1	PF00036.27	EF-hand_1	59	86	4.90E-06
Glyur000062s00005484.1	PF13499.1	EF-hand_7	154	211	4.50E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.547
SRR1783600	control	8.717
SRR1783602	moderate drought stress	10.242
SRR1811619	moderate drought stress	10.164

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.528
DRR006520	Root Summer glycyrrhizin high producing strain	27.599
DRR006521	Root Winter glycyrrhizin high producing strain	52.601
DRR006522	Root Winter glycyrrhizin high producing strain	51.877
DRR006523	Root Summer glycyrrhizin low producing strain	28.070
DRR006524	Root Summer glycyrrhizin low producing strain	28.256
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.732
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.310

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.370
SRR2868004	Drought Stress (root)	52.040
SRR2967015	Control (root)	54.684

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.151
SRR9715740	Leaf	30.718
SRR9715741	Leaf	36.056
SRR9715739	Root	6.818
SRR9715742	Root	18.120
SRR9715743	Root	18.563

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.035
SRR8749028	MeJA induced 9h	38.534
SRR8749029	MeJA induced 9h	28.092
SRR8749030	Uninduced	47.677
SRR8749031	Uninduced	42.077
SRR8749032	Uninduced	30.657

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.465
SRR8400027	Control - Root	51.360