Gene detail

Gene detail information of Glyur000062s00005481

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47860.1	2.00E-146	Protein of unknown function (DUF1350)
NR	XP_006585864.1	0	PREDICTED: uncharacterized protein LOC100820080 isoform X1 [Glycine max]
COG	YP_007110219.1	3.00E-45	hypothetical protein GEI7407_2694 [Geitlerinema sp. PCC 7407]
trEMBL	tr\|I1KWX4\|I1KWX4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G34050.1}

Sequence

Transcript Sequence

>Glyur000062s00005481.1
TATTTTTTCATTTCATTTCACCCAGCACCACTCCGTTTACCACAAATCAATCGTTCAATGTTTTTTCAGTTGGAAACGACGTGAAAAGCAGAGCAAAGCAAAAGCAATTAGTGAGTATGGCAGCTACCTCGCTGCTGTGGACACCTACCTCTCTCACTCTCACNCTCACTCTCAACGGCGGCAGAGAATCCCATAAGCTAAACGCAAACTCCATCTCCTTTCACCAGCAGCGTCGTTTTCGCTCCAAAACTAGAATCTGTTGTTGCAACGACGACACAAAACGACAAACACCCCAATCCGAAGCCATCCAAGTTTACTCCCAAATCGAGAGATTACTCACAGATTCTGCTAGACAATCACAAAATGCTTGGTGGGGTTCCGGAGACTGGAGTGAAGGATCATGGATTCTCAAACCCAAAAGCTCCAAACCCAATTTTGTTGTACATTTTGTGGGAGGTATATTTGTTGGAGCTGCCCCTCAGCTTACCTATCGTTGGTTTCTTGAGCGTCTCTCGGAAAAGGGCGTATTGGTCATTGCAACTCCATATGCCAGTGGATTTGATCACTTCCTCATTGCAGATGAAGTACAATTCAAATTTGATCGGTGCTACCGCTCACTGCAAGAAACAATCCAAGATCTTCCTATTTTTGGTGTTGGCCATTCTTTGGGATCGGTTGTCCACCTTCTGATTGGGTCAAGATATGCAGTGCAAAGATCTGGAAATGTTCTCATGGCATTCAATAACAAGGAAGCAAGTTCAGCTATCCCCTTGTTCTCTCCAGTTCTTGTCCCAATGGCTCAAAGCATTGGTCCACTTCTATCAGATATTTTTTCTTCACCAACTCTACGAGCAGGGGCAGAGATAACTTTAAAACAATTAGAAAATGTTAGCCCTCCCCTTATGAAGCAGGTTCTTCCTTTAGTTGAGCAGCTCCCTCCCTTGTATATGGATTTGGTCAAGGGAAGAGAAGATTTTACTCCAAAGCCTGAGGAGACACGTCGACTTATAAAATCATACTATGGCATATCCAGAAATCTTCTCATAAACTTCTTCAAGGATGATTTAATAGATGAGACTCCAACTCTAGCACAGGTGCTTAGTTCAGAAGCAGCCATTAGCTCTGTACTGGACATGTCAATACGCAAGTTGCCTGGAGATCATGGTCTTCCATTGCAACAGGCCCTACCAGATGTTCCACCAGCAATGGCTGATGCAGTTAATCGCGGGAGCGAGCTTCTGTCAAATCTTACTATTGGAACACCATTGGAGACAGTTGCCAAAGAAGTCGGGAACACGCTAGGCATGGATTCGAGAGTCCTTCGCACGCAAGTATCAAAGGAGATGGATCTGCTTGTGGATGTGATCTCATCCTGGATAGCCTCCAATGCAGGGCCTAAGCTTCTTAGGCCGTAAGGTCACAGTTTCATATACATATGCAAGTAGAAAGAGATGCTTTGTAAAAAGGTATAGAAAAATCAAAGTTGGCATTAACACTTCTTTCATCCTTTATTGTAGAATGCCAATAATGTTAATCCATACAAGTAAGGCAAATAGAACTCTGCTCAATCACCCGTTGTTGTAAAAATATGATCTACGTTGTGACATTAAAAAGATTATTTTCTGTGTAATNTGCAGCCGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00062	174679	179499	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000062s00005481.1	PF07082.6	DUF1350	93	357	2.40E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.259
SRR1783600	control	41.222
SRR1783602	moderate drought stress	57.287
SRR1811619	moderate drought stress	57.031

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	66.680
DRR006520	Root Summer glycyrrhizin high producing strain	65.359
DRR006521	Root Winter glycyrrhizin high producing strain	45.349
DRR006522	Root Winter glycyrrhizin high producing strain	44.408
DRR006523	Root Summer glycyrrhizin low producing strain	56.809
DRR006524	Root Summer glycyrrhizin low producing strain	56.251
DRR006525	Leaf Summer glycyrrhizin high producing strain	42.287
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.926

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.179
SRR2868004	Drought Stress (root)	40.443
SRR2967015	Control (root)	38.409

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.551
SRR9715740	Leaf	42.415
SRR9715741	Leaf	55.611
SRR9715739	Root	13.811
SRR9715742	Root	25.083
SRR9715743	Root	21.635

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.013
SRR8749028	MeJA induced 9h	14.736
SRR8749029	MeJA induced 9h	11.003
SRR8749030	Uninduced	20.280
SRR8749031	Uninduced	7.908
SRR8749032	Uninduced	12.503

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.188
SRR8400027	Control - Root	34.679