Gene detail information of Glyur000062s00005478 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32080.1 | 0 | membrane protein, putative |
| NR | KEH20263.1 | 0 | membrane protein, putative [Medicago truncatula] |
| COG | NP_126052.1 | 1.00E-19 | hypothetical protein PAB0240 [Pyrococcus abyssi GE5] |
| Swissprot | tr|Q9FVQ4|PLGG1_ARATH | 0 | Plastidal glycolate/glycerate translocator 1, chloroplastic (Precursor) |
| trEMBL | tr|A0A072TTT5|A0A072TTT5_MEDTR | 0 | Membrane protein, putative {ECO:0000313|EMBL:KEH20263.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00062 | 157091 | 161956 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000062s00005478.1 | PF04172.11 | LrgB | 351 | 516 | 1.40E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.550 |
| SRR1783600 | control | 20.684 |
| SRR1783602 | moderate drought stress | 21.481 |
| SRR1811619 | moderate drought stress | 21.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.368 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.072 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 60.981 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 59.459 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.176 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.730 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 428.152 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 425.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.240 |
| SRR2868004 | Drought Stress (root) | 15.885 |
| SRR2967015 | Control (root) | 9.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 149.004 |
| SRR9715740 | Leaf | 190.207 |
| SRR9715741 | Leaf | 159.155 |
| SRR9715739 | Root | 5.147 |
| SRR9715742 | Root | 16.101 |
| SRR9715743 | Root | 13.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.804 |
| SRR8749028 | MeJA induced 9h | 6.925 |
| SRR8749029 | MeJA induced 9h | 3.525 |
| SRR8749030 | Uninduced | 2.904 |
| SRR8749031 | Uninduced | 1.511 |
| SRR8749032 | Uninduced | 2.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.367 |
| SRR8400027 | Control - Root | 29.157 |