Gene detail

Gene detail information of Glyur000062s00005471.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G35980.1	0	yeast YAK1-related gene 1
NR	KEH20273.1	0	Serine/Threonine kinase family protein [Medicago truncatula]
COG	YP_006981023.1	2.00E-19	serine/threonine protein kinase [Propionibacterium acidipropionici ATCC 4875]
Swissprot	tr\|P51568\|AFC3_ARATH	6.00E-49	Serine/threonine-protein kinase AFC3
trEMBL	tr\|A0A072TTU8\|A0A072TTU8_MEDTR	0	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:KEH20273.1}

Sequence

Transcript Sequence

>Glyur000062s00005471.1
ATGATTGATGAGAAGGGANGAAGAGCAATATCAATAATGGAAGTGGAATTGGGGAAAGGGAATCTGTGAGTTGTGGAATTAGGGGTCTCTGGCACTTTNTCTCTCTATCTNTCTCTCTCTCTTGCTTGCTTGCTCTTTGGGGGTGATGGATGAGGTTAGGCCTGGTAGTAGTGAAGCGGAGCAGACTCAGTCCAGAGACTCGGTTGCCGCTGTGTCGGCAGCAGCGGCGTCATCTTCGGCGGCCGGATGGCGTCCCCGGGAGCTTGCTTTTGCTCCTTGTGTGCCGCGGGGTGAAGAAGTTAGTGCTGGAAAGTCCCAAACATTGCGTGCGGGTGTGAGGAAACCTTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATACCAAATATGCAATCCACAGTTTAAATATTCTGAAGATCTAAATCCAAAAAGATTTTTGACCAGCCCGTCTATTGGAGTTCTTAATGATGGATACGATAATGTAAACTCAGATCTTATTCTGACAGTGAATTTTGTCTTGATCCATTTAGAGAAAAATAGAAGATATATTGTCAAAGATCTCCTTGGCCATGGTACGTTTGGACAAGTGGCCAAATGCTGGGATTCAGATACCAACAGTTTTGTTGCTGTGAAGATCATAAAAAATCAACCTGCATACTATCAACAGGCGCTGGTCGAAGTAACTATTTTAACAACGTTAAATAAGAAGTATGATCCTGAGGATAAACATCACATTGTTCGTATATATGATTATTTTGTATATCAACGGCATTTGTGCATATGCTTTGAACTGCTGGATACAAACTTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTATCACTTGGTATTGTTCAGCTGTTCTCCAAGCAGATTNTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCACTGTGAAGCCAGCAGAAATCAAGATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTTTACTCCTATATTCAGAGTCGATACTACAGATCTCCTGAGGTTCTTCTTGGATATCAATACACAANCGCAATTGATATGTGGTCCTTTGGGTGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTCCCTGGGGCTTCAGAATTTGATCTTTTGAGGAGGATGATTGAAATACTTGGAGGACAACCACCTGATTATGTACTAAGGGATGCCAAAAACACAAGTAAATTCTTCAAGTGTATTGGAAGTCTCCAGAACATAGAAAATATTGAGAGCTCAAAAAATGGAAGTGTTTATCAAGTATTGACAGTGGAAGAATATGAAGCTAGAGATTTGAAGAAGCCGTTAATTGGAAAAGAGTATTTTAATCATATGAACCTTGAAGCAATAGTTACAAGCTACCCCTACAGGAAAAACCTACCTAAAGAAGATATTGTCAAAGAAAGTCAAATACGGTTGGCTCTTATTGACTTTTTGAGAGGGCTTGTTGAATTTGATCCTGCAAAACGCTGGTCACCCTTCCAGGCTTCAAAACACCCTTTTGTAACTGGGGAACCTTTTACACACCCTTACAAGCCTCCCCCTGAGACCCCTCACATTCCGGTAGTTCAAAACATCAAGGTGGATAATCATCCTGGTGGAGGGCACTGGTTTGCGGCTGGTCTATCACCTAATGTTCCAGGCAAAAGCAGAGCTTCTCTCTATAGCAGTCCACATTTTCAGATGGTGCAACATCCACCTGCTANTAGTTATGGCAGTGTAGGAAGTCATGGGAGCTATAATGATAGTGTTGGACTTGGAAGCAGCTATGGAAGTTATGGGGAGAGCAGTAACATGTTTGCTTACTATTCACCTATCGGTCCATCTGGTATGAACATGCACAGTCAGGGCGGTATGTCAATGCTTGGAAATAGTCCTGATGCTCGGAGAAGAGTCAAGTACCAACCTGGGAATGGGCTGGGTATGAGTCCATCAGCTGGAAATTTTGCTCCCTTGCCCCTTGGTGCCAGCCCATCTCAATTTACTCCACCAAGTTCCTATAGTCAGGTTTCAGTTGGTTCGCCAGGACACTTTGGACCTACATCTCCTGCAAGAGGAACTTCTCATGGATCGCCTTTAGGCAAGACGGCTGCTGTTAGCCAGTTTAATAGAAGAAAAAATTGGGGACATTCTGGAAGTCCTCAGACTCAAGAAACAACATTTTCTTCACATTGGCATGGTCAATATCACGATANCTCAAGCCATGCCGAGGGAACATCACAAGCTCTTGGCAGTTCACCTCTACAATCAAATATTAATCCTGGAAACTGGAAGCAGCGAGGAAGTGGAGGGGTATCTGCTAATCAGAACATTCCATGCNTGATTATGCCTAGTTCTAATATGAACTCGCAATCGACGGAGTTGATTCATGACAATGTGGAGACAGGCTTTTCATTACCTGACCCTGGAGACTGGGATCCTAATTATAGTGATGAACTACTTCTGCAAGAGGATAGTTCAGATGAAAGCTGCTTGACAACTGAGTTTGGCAGAAGNATGAATCTTGGTTCCACTGAACCATGGTCTGGATTTGGAAGGTTCAACCATGTCTCCAACTCAAGCTCTCCAATAATTATGCAGAGACTAAATGGACCAGGTCAAACATTTTCAAATGTAGAGATGGGTAGCCCTCCAGCTCATGATCTTCAAGCAGCATATATACCCTCTATGTCAAAGCCTTTTCATCTCATGCCTCATGTTTTACAAAATTCTCCAAGCCGTTTTGGACACCAATCTGTTCAAAGATACACACATGGTAGACCCCCCCAGGTTAATGATTGGAATCAAATTAAGATTCAGACTCCTCCTTCTGGTTTCAGCAGTGTGGGTCCGCGTTCTCCTAGGAATGCCTCATTCACCAGCAGTATGGCATGGGGGCGAAGAATGAATCCTCCTATGTCAAGCATACCTCCTGTGTCAAGCATACCGCCAACATCCCGCACAAGAAAAGATTATGCAAGGATAGACTAGCCACTAGTCCTGATTCAGTGAATCAGCTTGGCTTTTTTTATTATTATTTTGGTTCATGACAGAGGTGCTCTGTAGAAGGGGAAAAAAAGGNAGGGAATTGAATGGGGTGAAGTGAAAAAAAGGCGGCCAGTACCCAATGGTTCATTAGCAAACCCTTCTATCTTTGATCATTTATTGTGCTTGCGCTTAAAAATAATTTATGGTTATAGTTTGCATGTCATTGATCATTTATTGGGGTATTGGTATCTAGTAATTCAAAGGCACTATATACGCTGATGTCATAAGAAATCTTAGGAGTTGGTTGCGTGCATAATGTTTTAATATTCAGTGCCATCTTTATTGTCATTTATTGTATCAGAGCCCTCGGAGGCTTCTAAAGTGCTCTCTTCTTCCTACTGGTTTGAGCTCTTTAGCAAGAGTCCCATGATATAAGTATGTTTTGTGGTTGCCCTCCAGTGAGATCCTTTAAATTTGAACTCATATATTTGATTTATTTGGTATGCTAGATAGCTAGCTGCCTTGAATATGTTTTGCCCAGTGGGTCTGTGATGTGGGGTGTCAGTATATCTCTAGCAACATGACCAGAATTTGAAGGTCATTTTGTAATAAGTTAGGATCATTTTCTGTAGATGTTAAACTAANGGAACTACCATGTTCATAGAAACAATGTTAGATATGGTGTTTCATAGAAACAGTGTTCATAGTAACTACNAGGCTTCGAGGGGAAGACGATTGGTTTTGGTCAGTGTTGAGGATGTTGATTGGTGGTGTTCTAGTTGTGGTAGTTTGGNTGGTTTTTATTTGCTGTTTTTTTAAAGTCTGTCTTTAGCTTCCAGTTCTTTAGGTGTTCTGGATGTTTACAGCAGCGAGTCATGGCTTGAAATGTTGTATGTGTTTAGACTCTGTATATGCTGTGTGTTTGGCCTGTTTATTTGGTCTTCTATTTGTAGATGCCGTTTGGCGGGGTTTATCCCCTTTTCTATGAATTTGATCCTTTGACCAAAAAAAAAAGGAACTACCATGTCAAGAATAATGGGTTTTTTGAAGATGATAATAATAACAAGAAATCAACAACAAATAGAACCTATCCAGTTAATACAGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00062	116574	129579	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000062s00005471.1	PF00069.20	Pkinase	137	477	2.40E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.106
SRR1783600	control	33.087
SRR1783602	moderate drought stress	34.186
SRR1811619	moderate drought stress	34.199

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.861
DRR006520	Root Summer glycyrrhizin high producing strain	26.640
DRR006521	Root Winter glycyrrhizin high producing strain	29.698
DRR006522	Root Winter glycyrrhizin high producing strain	28.954
DRR006523	Root Summer glycyrrhizin low producing strain	30.493
DRR006524	Root Summer glycyrrhizin low producing strain	30.120
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.396
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.424

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.518
SRR2868004	Drought Stress (root)	56.253
SRR2967015	Control (root)	52.844

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.926
SRR9715740	Leaf	32.719
SRR9715741	Leaf	35.100
SRR9715739	Root	11.624
SRR9715742	Root	35.875
SRR9715743	Root	29.980

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.031
SRR8749028	MeJA induced 9h	30.136
SRR8749029	MeJA induced 9h	19.036
SRR8749030	Uninduced	27.275
SRR8749031	Uninduced	30.369
SRR8749032	Uninduced	20.843

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.235
SRR8400027	Control - Root	43.587