Gene detail information of Glyur000062s00005468 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55690.3 | 7.00E-175 | Sec14p-like phosphatidylinositol transfer family protein |
| NR | KHN10116.1 | 0 | Sec14 cytosolic factor [Glycine soja] |
| Swissprot | tr|Q501H5|SFH13_ARATH | 0 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH13 |
| trEMBL | tr|I1MML5|I1MML5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G17830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00062 | 94992 | 100897 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000062s00005468.1 | PF03765.10 | CRAL_TRIO_N | 77 | 118 | 7.90E-09 |
| Glyur000062s00005468.1 | PF00650.15 | CRAL_TRIO | 142 | 309 | 5.70E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.972 |
| SRR1783600 | control | 9.891 |
| SRR1783602 | moderate drought stress | 7.580 |
| SRR1811619 | moderate drought stress | 7.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.788 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.763 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.663 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.464 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.314 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.414 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.936 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.993 |
| SRR2868004 | Drought Stress (root) | 6.264 |
| SRR2967015 | Control (root) | 6.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.069 |
| SRR9715740 | Leaf | 2.061 |
| SRR9715741 | Leaf | 2.873 |
| SRR9715739 | Root | 2.180 |
| SRR9715742 | Root | 5.624 |
| SRR9715743 | Root | 5.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.877 |
| SRR8749028 | MeJA induced 9h | 0.446 |
| SRR8749029 | MeJA induced 9h | 0.196 |
| SRR8749030 | Uninduced | 0.198 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.193 |
| SRR8400027 | Control - Root | 19.954 |