Gene detail information of Glyur000062s00005460 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15730.1 | 5.00E-79 | Cobalamin biosynthesis CobW-like protein |
| NR | XP_003547836.1 | 0 | PREDICTED: COBW domain-containing protein 1-like [Glycine max] |
| COG | YP_007099628.1 | 5.00E-101 | putative GTPase, G3E family [Chamaesiphon minutus PCC 6605] |
| trEMBL | tr|A0A072U3B1|A0A072U3B1_MEDTR | 0 | Prli-interacting factor L-like protein {ECO:0000313|EMBL:KEH20305.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00062 | 51053 | 55445 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000062s00005460.1 | PF02492.14 | cobW | 3 | 175 | 1.40E-44 |
| Glyur000062s00005460.1 | PF07683.9 | CobW_C | 235 | 329 | 9.20E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.191 |
| SRR1783600 | control | 1.247 |
| SRR1783602 | moderate drought stress | 1.805 |
| SRR1811619 | moderate drought stress | 1.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.711 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.646 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.472 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.349 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.634 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.445 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.337 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.419 |
| SRR2868004 | Drought Stress (root) | 4.285 |
| SRR2967015 | Control (root) | 4.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.138 |
| SRR9715740 | Leaf | 4.165 |
| SRR9715741 | Leaf | 2.198 |
| SRR9715739 | Root | 0.370 |
| SRR9715742 | Root | 1.674 |
| SRR9715743 | Root | 2.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.777 |
| SRR8749028 | MeJA induced 9h | 3.097 |
| SRR8749029 | MeJA induced 9h | 3.773 |
| SRR8749030 | Uninduced | 0.615 |
| SRR8749031 | Uninduced | 0.215 |
| SRR8749032 | Uninduced | 0.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.349 |
| SRR8400027 | Control - Root | 5.804 |