Gene detail

Gene detail information of Glyur000062s00005455

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32120.1	4.00E-114
NR	XP_004509552.1	1.87E-179	PREDICTED: transmembrane protein 45B-like [Cicer arietinum]
trEMBL	tr\|A0A072TTZ7\|A0A072TTZ7_MEDTR	6.00E-172	Transmembrane 45B-like protein {ECO:0000313\|EMBL:KEH20308.1}

Sequence

Transcript Sequence

>Glyur000062s00005455.1
CTTAATTATATGTGGAGTTTTGTGCGTGTGTGTGACTTTTTATATATTAGTTTCTGATTTCCATGCCTGGAAACTGCTAGGTGCTAAGCTGAACGTACCACTTGCCCCACTACGTACTGTGTTATCAACATGTGTGTGCAGGACGTACGGTGACCAAGTTGCTCAAGATATATATGGAGGAAACTTGATAACAGAAGAGCGCAAGTCATGGCCTTTGCATTGTGGTCTCTTGCATACCCAGATGGAAGAACAGGGAAAAAGACTCTTCTTTTAGAACCCCCCAGAGGCCAGATCAGTGCTGCAAATTCATTTCCTGATTAGTTTGCAGGTTTACAAGGTGGAANTTTTTTAGTGATTATCTATCTGCTTTGATATAAGCTGAAGAATCATTCAAGGATCCAGTTGATTGAGTGCACTAGAAAGATTTATGTAGAGAGTGGTAGAAATAAATCAGAAAGATGGGATCTTTCATAGGTCATGTTTTGCCAGGAACCTTGTTTCTTCTAGTTGGAGTATGGCATATATGGTGCTCCATGGTGAGATATGTAGCAAGTCCTAAGACATTCCGGGTCCGGGTATGGAATCCTGTACCAGGGTTTGATGGGAGGGTCAAGCACTTGGAGCTCTATGTTATTTCAATTGGTGCTTTCATTGACTTGTGCATTGAGCTCTTAATTGCAACACAGCTCAGGTTCTTCGTAGGTGGAATCTTGAACTCCANTTACTTGAATAACTTTGAGCACTCAGGAATGCTTCTAATGTTTTTGATCTTTGGTGTTGTTACCCTGCTCTCAGAAAGGACAAGATATCTTCCCTTGCCAGAAGGTTCACTTTGTTTGATTGCTGCCACAGCATTCAGTGCAGAGTATCTTCTATTTTACTTTCACTCAACAACACACAAAGGCCTTGAAGGCTATTATCATGTCCTCCTTGCCTTCCTAATTGGTCTATGTGTTTTATCTTCAATTGCTGGAGCCCTTTTTCCAACCAGTTTCCCAGTTGATTTATGTAAAGGCATTGCTATAACACTGCAAGGAATCTGGTTCTATCAGACAGCCTTTGTTCTCTATGGCCCCATGCTACCGGCCGGTTGTCGGCTCAGGGACAGTCATGTAACATGTCATTCACATGAGAGTGAGGTTCGTGGTGAATTGCTAGCTAATGTTCAGCTCTTTTTTGCAGTCCTTGCTGTTCTTGCAGGAACCATAGCATCCTTTGGCTTTGCAGCTTCAAGATATGGGAATTTTGAAGAGCTTGCTCCCAATTCGGGGTTTGATTAGATGAAGACTCAAGTAGGCTATGGTATTATTGTGTTTTTTTTTTTGGAGAATGTAATATATTTGGGTGTGGTGAAATGATTTTTGGGAGNCAAATGTAGAACTAATAAGGAAATTATTAATGATAATTTTTGAATCCTCAATGCCTTTTCTTTCGTGGGGTGGCCTCAACATCTGCTGACGGTTTGCCAAATATGCTTGTGCAAACAATTTAATGGAAAAANGAATCTAGCAAAAGTGATACAATGAGTATATGCTAGAGTCAAGTGAGTCAATGCTAGATCAAAGGAAAAAGAATTTAGTGATTTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00062	25489	29817	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000062s00005455.1	PF04819.7	DUF716	121	253	3.50E-40
Glyur000062s00005455.2	PF04819.7	DUF716	121	253	3.50E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.612
SRR1783600	control	10.512
SRR1783602	moderate drought stress	10.558
SRR1811619	moderate drought stress	10.446

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.855
DRR006520	Root Summer glycyrrhizin high producing strain	11.844
DRR006521	Root Winter glycyrrhizin high producing strain	11.421
DRR006522	Root Winter glycyrrhizin high producing strain	11.386
DRR006523	Root Summer glycyrrhizin low producing strain	9.736
DRR006524	Root Summer glycyrrhizin low producing strain	9.763
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.053
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.114

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.813
SRR2868004	Drought Stress (root)	3.110
SRR2967015	Control (root)	3.154

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.906
SRR9715740	Leaf	9.485
SRR9715741	Leaf	5.086
SRR9715739	Root	2.787
SRR9715742	Root	4.330
SRR9715743	Root	4.520

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.835
SRR8749028	MeJA induced 9h	1.544
SRR8749029	MeJA induced 9h	0.748
SRR8749030	Uninduced	1.979
SRR8749031	Uninduced	1.038
SRR8749032	Uninduced	1.207

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.864
SRR8400027	Control - Root	16.106