Gene detail information of Glyur000061s00006578 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18670.1 | 1.00E-162 | Leucine-rich repeat (LRR) family protein |
| NR | XP_004512856.1 | 0 | PREDICTED: leucine-rich repeat extensin-like protein 3-like [Cicer arietinum] |
| COG | YP_004775215.1 | 4.00E-24 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|Q9LHF1|LRX4_ARATH | 0 | Leucine-rich repeat extensin-like protein 4 (Precursor) |
| trEMBL | tr|I1K5T9|I1K5T9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G35330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00061 | 434796 | 436865 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000061s00006578.1 | PF08263.7 | LRRNT_2 | 65 | 97 | 4.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 115.877 |
| SRR1783600 | control | 116.277 |
| SRR1783602 | moderate drought stress | 41.234 |
| SRR1811619 | moderate drought stress | 38.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 104.968 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 96.924 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.017 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 119.727 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 116.267 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.940 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.701 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.161 |
| SRR2868004 | Drought Stress (root) | 19.818 |
| SRR2967015 | Control (root) | 34.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 31.324 |
| SRR9715740 | Leaf | 7.165 |
| SRR9715741 | Leaf | 8.600 |
| SRR9715739 | Root | 310.814 |
| SRR9715742 | Root | 245.003 |
| SRR9715743 | Root | 226.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 224.255 |
| SRR8749028 | MeJA induced 9h | 111.782 |
| SRR8749029 | MeJA induced 9h | 81.625 |
| SRR8749030 | Uninduced | 40.543 |
| SRR8749031 | Uninduced | 4.412 |
| SRR8749032 | Uninduced | 11.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.931 |
| SRR8400027 | Control - Root | 54.895 |