Gene detail

Gene detail information of Glyur000061s00006574.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24503.1	1.00E-155	aldehyde dehydrogenase 2C4
NR	XP_003525266.1	0	PREDICTED: aldehyde dehydrogenase family 2 member C4-like [Glycine max]
COG	YP_722268.1	1.00E-131	aldehyde dehydrogenase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q56YU0\|AL2C4_ARATH	0	Aldehyde dehydrogenase family 2 member C4
trEMBL	tr\|I1K5U2\|I1K5U2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G35350.1}

Sequence

Transcript Sequence

>Glyur000061s00006574.2
ACATTCTTTCCTCTATACACTAGTAGTAGTCATTAACAACGCGCGCGCACACAGATGACTGGTCTCTTTAACTCCAGTAATAATGGCAACGATAGCTCCTTGCTCAAGATGCCCAACATCAAGTTCACCAAGCTCTTCATCAATGGAGAGTTTGTCGATTCCGTTTCAGGGATGACATTTGAGACAATAGACCCAAGAACGGGAGAGGTGATTGCGAGAATCAGCGAAGGAGCTAAAGAAGACATTGACCTGCTGTTAAAGCGGCGCGTGAGGCATTTGACTCAGGAAAGGGCGAAGATTATGATGAAATGGGCAGACCTAATTGATGAAAACATAGAAGAATTGGCAGCACTAGATGCGATTGAAGCTGGGAAGCTGTACCAAATTGCTAAGGCCATGGAAATCCCTCATGCTGCAAGTGCCCTGCGTTACTATGCAGGTGCTGCTGACAAAATCCACGGCGAGGTATTAAAGGTATCTGGGGAGTTCCACGCGTACACACTATTGGAACCAATTGGCGTTGTGGGACACATAATTCCTTGGAACGCCCCTACTTCCATTTTCTACGCCAAGGCCGGCCCTTCCTTAGCTACGGGNTGCACCATTGTCCTCAAGCCTTCTGAACAAACCTCTCTCTCTGCTTTGTTTCATGCCCATCTAGCCAAGCTGGCTGGAATCCCAGATGGAGTGGTCAATGTAGTACCAGGATTTGGCCCAACTGCTGGTGCTGCAGTAAGCTCACACATGGACATTGATAAGGTCAGTTTTACTGGTTCAACAACAACAGGCCGTGAGATAATGCGGGCTGCAGCTAACAGTAACTTGAAACAAGTTTCACTTGAATTGGGAGGCAAGTCACCCCTCATAATTTTCGATGATGCTGATATAGACAAAGCTGCTGAGCTTGCNCTCTTGGGCATTCTATTTAACAAGGGAGAAGTTTGTGTTGCAAGTTCCCGTGTATTNGTTCAAGAAGGGATCTATGATGAATTTGAGAAAAAATTGGTTGAGAAGGCAAAAGCTTGGGTCATTGGGGATCCTTTTGATCCTAAAGTTCAGCAAGGGCCTCAGGAGGACATGCTTATAGCACAGGATGAAATATTTGGTCCTGTGATGGCGCTGAACAAGTTTAAGACTATTGAGGAAGCAATTAGGAGTGCGAATAATACTAGATATGGCTTAGCAGCAGGCATTGTGACCAAAAACTTGGATACAGCAAACACAATGTCAAGGTCCATTCGTGCAGGCACCATTTGGATCAACTGTTATTTTGCACTTGGGGATGATGTTCCTTTTGGAGGGTATAAAATGAGTGGATACGGAAAAGATTATGGATTGGATGCCCTTCACAAATATCTGCAAATTAAATCTGTTGTGACTCCCATTTATAATTCTCCTTGGCTCTGATCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00061	396299	414619	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12355	REF1	EC:1.2.1.68	Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000061s00006574.2	PF00171.17	Aldedh	34	339	1.40E-102
Glyur000061s00006574.2	PF00171.17	Aldedh	340	440	3.20E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.806
SRR1783600	control	16.467
SRR1783602	moderate drought stress	23.283
SRR1811619	moderate drought stress	22.886

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.461
DRR006520	Root Summer glycyrrhizin high producing strain	4.383
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.123
DRR006524	Root Summer glycyrrhizin low producing strain	1.827
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.599
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.413

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	157.629
SRR2868004	Drought Stress (root)	200.836
SRR2967015	Control (root)	162.005

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.458
SRR9715740	Leaf	1.199
SRR9715741	Leaf	1.767
SRR9715739	Root	32.918
SRR9715742	Root	37.217
SRR9715743	Root	34.844

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.622
SRR8749028	MeJA induced 9h	138.327
SRR8749029	MeJA induced 9h	136.299
SRR8749030	Uninduced	65.376
SRR8749031	Uninduced	126.093
SRR8749032	Uninduced	78.630

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	126.325
SRR8400027	Control - Root	98.267