Gene detail

Gene detail information of Glyur000061s00006571

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53250.1	2.00E-11	arabinogalactan protein 22
NR	XP_004503418.1	6.77E-20	PREDICTED: arabinogalactan peptide 22-like [Cicer arietinum]
Swissprot	tr\|Q9FK16\|AGP22_ARATH	2.00E-15	Arabinogalactan peptide 22 (Precursor)
trEMBL	tr\|I1KIS0\|I1KIS0_SOYBN	2.00E-19	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G09600.1}

Sequence

Transcript Sequence

>Glyur000061s00006571.1
CGCCATTGGTGGCGTGGCGGGTCTTCAAAGTTCAAACCCACTCTCTATTTTCTTGAAATTTCACATTTGACGCCTCAACGTTTCTTCTCGTTGCNCTCTTTCACCTATAAATAACATATCTTCCCCTTTTCAGTTCACTCTCCAATCCAAATACCTCAGATTTTCCCAATTTTCACTTCTCAGTTCCCAATTGTCTCACCTCTCACTTCTCAGTTCCCAAATTTCTTTTCTCAATTTTCCCGGAAAATGTTGGAAATGAGGGCATTGAGGTTTTTCTCTCTCTCAATTATCTGTTTGGTTCTGTTGGTCATCTCTGATCTCGGACGAGCTCGCGACTTTTCTCCTTCTCCTGCACCTGCTCCTACCAGCGATGGCACCGCGGTTGATCAAGGAATTGCTTACATTCTCATGCTGGTGGCTCTGGCAATCACATACATGCTCCATTGATTCGTGTTCTGTTTCAGCCATTATTATTTTGAGAATATTTTCTCTGAATATTCTGGATTTTTCTTTTGATTTTTTAGTGTAATTATTGATTATTGATGAAATTAGAGATGTGATTGTTGATTATTCTCCCACTCTCAGCGATGGTTATGGGTATCTTTATTCTCAGTCATCCATTCTTTTTCGACGCGGTTTTGCTTTTTCTGCGCTGAGATACTTTATTTTATTCTTGTCGGCAAAGAAAATGAGGCTTCTTCTAGCATGCACAAACACAACAGGTTGTGTACCATACACAAGTTTGATTAACCCTTGGATGAATATGTGTCTCACGGTAGATCGTGGACACTCCCACACATGATTTCCCCCACCTTCTTCTAGACCACCGGCTGCGCCACCACAACTCCGCTCGGTCAACATCACCCACGACCCCTGCACCTGTCTCGTCTCGATCCGCTCCCCCGCCTCTTATTCTCCTTCCAACGCCTCATGCGACAGCACGACTAGCTGCTGCAGTTCTGGGTTCACGAAGTTTTAGGGCAACAATGGCGTGGTTTGGTGTGTCCCCAGCGGGCAGCGGCAGAGCTCCGATGAGAAACTCCGACGCAGTGGGGTTCTTAAGAGTTCACCTCGTACGCAGAATCCGTTCTTCTTCCTCGGCGACGGCGACCACGAGCACAACACCCCTCCAATCTTTGAAGCCTTCGAGAANGGCGGAGTTCTGATGAGAAACTCNCGCACCACCTCCTTGTCGACATGCCATCCGAACTGCTTCCATCGTCAACAAAGCGCTCCTGAATCATCAGCGATCAGCAACACCAACACCATCGTTGCCGACGATGAGCAAGGCAAGGATGGAGAAGCGGGAAGAGCTTTGTCGGGGTTACGGTGGCAGCGTCAGGGGTGATGGAAGGAATCAGAGGGAGTAGGACCGGAGTGAATCGGAGGAGGGAAGTTTGTTGCAGTGGTTAGCGAGCCACGGACACCGCAAGACCGCCTCCACATGAGACCGGAGCCATCTAACTTGTTGCAGGGAAGTTTGTTTTCGTTTTCGGGGAGCAAGAGAGAGAAAGCATGAAAAAGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00061	385551	387194	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000061s00006571.1	PF06376.7	DUF1070	34	66	2.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.590
SRR1783600	control	11.578
SRR1783602	moderate drought stress	2.334
SRR1811619	moderate drought stress	2.379

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.827
DRR006520	Root Summer glycyrrhizin high producing strain	13.039
DRR006521	Root Winter glycyrrhizin high producing strain	1.207
DRR006522	Root Winter glycyrrhizin high producing strain	1.208
DRR006523	Root Summer glycyrrhizin low producing strain	36.769
DRR006524	Root Summer glycyrrhizin low producing strain	36.870
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.068
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.786

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.316
SRR2868004	Drought Stress (root)	4.201
SRR2967015	Control (root)	7.167

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.895
SRR9715740	Leaf	34.500
SRR9715741	Leaf	44.576
SRR9715739	Root	87.522
SRR9715742	Root	51.065
SRR9715743	Root	55.186

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.432
SRR8749028	MeJA induced 9h	5.459
SRR8749029	MeJA induced 9h	9.298
SRR8749030	Uninduced	27.749
SRR8749031	Uninduced	10.477
SRR8749032	Uninduced	11.650

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.893
SRR8400027	Control - Root	12.871