Gene detail

Gene detail information of Glyur000061s00006568

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45130.1	2.00E-74	RAB homolog 1
NR	AET05276.2	1.13E-136	RAB GTPase-like protein A5B [Medicago truncatula]
COG	YP_002463522.1	9.00E-27	small GTP-binding protein [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|P31583\|RHN1_NICPL	6.00E-96	Ras-related protein RHN1
trEMBL	tr\|G7L8X6\|G7L8X6_MEDTR	4.00E-137	RAB GTPase-like protein A5B {ECO:0000313\|EMBL:AET05276.2}

Sequence

Transcript Sequence

>Glyur000061s00006568.1
CCCATTTGTCATTGCTAACTTATTGCCTTCTTTTGGGCTTCTCTTTTCAATCTTTGGAAAACCTTCTCAATAATCTTATCCTTTTTATTTTCCCATTGATCATCTAAGCTATGGCGAGGACAGGAAACAAGAGTTTACAAGCCAAACTGGTACTTCTCGGGGACATGGGAACAGGGAAGACGAGTTTGGTTCTTAGATTTGTCAAAGGCCAATTTTCCGAATACCAGGAATCAACAATTGGAGCAGCATTCTTCACTCAGGTTTTGTCTTTAAATGAAGCCACTGTGAAGTTCGATATATGGGATACAGCAGGGCAGGAACGATACCACAGTTTGGCTCCTATGTACTATCGTGGTGCTGCTGCTGCTATAGTTGTGTATGACATTTCAAGCATGGATTCTTTTGTGCGAGCCAAGAAGTGGGTTCGGGAAGTGCAAAGGCAAGCAAATCCAAATTTGATAATGTTTTTGGTGGCTAACAAGGCTGATTTGGAAGACGAGAGAAAAGTCGGAAATGAGGAGGGTGAGGAATATGCCAAAGAAAANGGCATGTCTTTTTTTGAAACTTCAGCAAAAACCGCACAGAATGTGAACGAGCTCTTCTATGAAATAGCTAAGAGATTGGCCAAAGCAAACCCTTCACGTCAAACTGGAATCAAGCTGCATAACAGACCTCAAGAAACTAGAAGAAGACTGTTTTGTTGTGCTTAACCTTAACGGCATGTCTTTAATTAATCTTTCCTCTGTGGAAGTATTTTGTTGTCTTTAATGGCATGTCTTATGTATATTGTACTCAAATAATCCCGGAAACATAACTGCTCATTTGGGAATCATCATATATCCTTTCATGAGATGGCCAGCTACCTAATCAAGACCAGTGGGAGTGAGATACATTCAGAATCCAGATCCATTGTTGATCTCTGCATACTTTTTCAGACAAGGAGAACAAATACTTGTAAGATCTCACACCCAAGGTTCTCTTTCTTTATTATGTTCTTTTTAACACTTACAAAAGTGTGGCTCAGATGGTAACACTTGGTGTTGCCGAACTTCTCATTTGTATGCGATAAACCATTACCAGAACTCAGTAAATAACTAAACAGTGTTTAAGGCCACACATGTATGTGCAATATATACTGTCTGAAAATAGTACAGTTGGGTGGAAAACGACAAACTGTAGCAATGGGAAATAAAGACTGTCCATTTCCCTTCCCGCTATTTTAACTGGCAAGGAACGAAAGCAAAGCAAGATAAAAATACAAATAAAAAACTGAGTTGCCATGCCCATGAGTGTTAACTACTGATCACTTAACAGTCGCGCCATAATAACGACGCCTGCAAAAAAGAAAGTACTCAGCTTTCTCGACGCCTGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00061	365187	368504	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000061s00006568.1	PF00071.17	Ras	12	171	1.70E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.318
SRR1783600	control	0.375
SRR1783602	moderate drought stress	0.434
SRR1811619	moderate drought stress	0.477

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.079
DRR006520	Root Summer glycyrrhizin high producing strain	0.157
DRR006521	Root Winter glycyrrhizin high producing strain	0.636
DRR006522	Root Winter glycyrrhizin high producing strain	0.592
DRR006523	Root Summer glycyrrhizin low producing strain	0.160
DRR006524	Root Summer glycyrrhizin low producing strain	0.158
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.597
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.531

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.280
SRR2868004	Drought Stress (root)	0.180
SRR2967015	Control (root)	0.076

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.026
SRR9715740	Leaf	10.182
SRR9715741	Leaf	6.488
SRR9715739	Root	0.088
SRR9715742	Root	0.006
SRR9715743	Root	0.223

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.140
SRR8749028	MeJA induced 9h	0.243
SRR8749029	MeJA induced 9h	0.129
SRR8749030	Uninduced	0.347
SRR8749031	Uninduced	0.109
SRR8749032	Uninduced	0.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.274
SRR8400027	Control - Root	0.417