Gene detail information of Glyur000061s00006565 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32350.1 | 8.00E-47 | Regulator of Vps4 activity in the MVB pathway protein |
| NR | XP_003630799.1 | 0 | IST1-like protein [Medicago truncatula] |
| trEMBL | tr|G7L8X5|G7L8X5_MEDTR | 0 | Regulator of Vps4 activity in the MVB pathway protein {ECO:0000313|EMBL:AET05275.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00061 | 359938 | 363475 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000061s00006565.1 | PF03398.9 | Ist1 | 14 | 170 | 1.40E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.000 |
| SRR1783600 | control | 7.580 |
| SRR1783602 | moderate drought stress | 8.291 |
| SRR1811619 | moderate drought stress | 8.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.923 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.866 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.740 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.740 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.558 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.333 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.195 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.183 |
| SRR2868004 | Drought Stress (root) | 3.897 |
| SRR2967015 | Control (root) | 6.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.317 |
| SRR9715740 | Leaf | 2.382 |
| SRR9715741 | Leaf | 2.114 |
| SRR9715739 | Root | 1.637 |
| SRR9715742 | Root | 4.169 |
| SRR9715743 | Root | 1.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.175 |
| SRR8749028 | MeJA induced 9h | 7.556 |
| SRR8749029 | MeJA induced 9h | 12.260 |
| SRR8749030 | Uninduced | 0.650 |
| SRR8749031 | Uninduced | 0.170 |
| SRR8749032 | Uninduced | 0.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.427 |
| SRR8400027 | Control - Root | 15.886 |