Gene detail

Gene detail information of Glyur000061s00006557

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24570.1	7.00E-77	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
NR	XP_007135879.1	4.84E-129	hypothetical protein PHAVU_010G165700g [Phaseolus vulgaris]
Swissprot	tr\|Q9ZS51\|PMP22_ARATH	1.00E-17	Peroxisomal membrane protein PMP22
trEMBL	tr\|V7ATE2\|V7ATE2_PHAVU	2.00E-129	Uncharacterized protein {ECO:0000313\|EMBL:ESW07873.1}

Sequence

Transcript Sequence

>Glyur000061s00006557.1
CTCCCCTTTTCCCTTTTTTTAACTGAAAACCCTATAATGCCCTCACTATTCTCTTCCTCCCCAATTTAAACTTCCCGGAACCCACCCACGAATCAATTTTTTTCCGGAAAACTTCCCCCTTAAACCTCTGCGGATGAGCCCGGCGCCAACGAACCNCACCCTCACCCTGCACAATCCCCACCGTCGTGCTTCTTGTTCGTGTCGTTGCCGGCGACGGTGCCGTTTTTACTGCCAAGATTGAAAAAAGAAAAGAAAAGAAAGGAAAATCTCTCTTCAATTTATGATGCTGAAGTAAAAAAATAATAATTAATGTAAACTTTTCATCTACTGGTTCTCAAGAAGTCACTCCATAAGATTACTGCGATAGTGTAGGACGTGAATTTGTTGTCTTGTGTTCCTTGAAGATCACAATCTGCTTTTGCATGACTAGTTGGAACTTTGAAGCGTGAACCCATTTAATCTTGGAAGATGTTATACCATGGTTTTGTCCTCCAGAACAAAATATGACGAGTTTGGACCCATTTAATCTTGAAAAGATGCTAAACCTGTCGTTAATTAGGTACTTCATTATTGTTCAACTGTTACAACTTCACTGCAAATTGAAAGCCGTTGCCATAACTTCCATCTTAAAAATGAGGCTGTCCACTGGATGAGAATGGTGATGGCGTTATAGGGTTTTCCANTAAGAAAAAAAGGGAAAGGGGGTGTGGGTAGTAATTTAAGAGGGTGTATTTAGCATGACCAATTGTACAAGGCAAATAGAAAAAAGCCCAAAGAAAGCCGCAACATTTTTCCAAGCCTCATCTTGTTTTGTCAGTGTTAGTTACCACTTACCACCTCATGCTCATAGTAGTCATACATACGTTGGTCGTTCGGTAAATGAATTGAAGGAGATGATGATGATGTTGAAGGTGTGGCATTGGTATCAGAATTGCCTTTCCGTTCATCCAGTGAAGACCCAAGTCATCAGTTCTGGCACCCTCTGGGCTGTTGGAGACATCACTGCCCAGTACGTCACTCACTCTGCTGCCAAAAAACGTCTTCAACTATCTCTTTCTGATGCAGATGCTAAATTTATCATCAATTGGAGACGCGTGGCTGTTACAAGTATGTTTGGATTCGGTTTTGTTGGACCAGTTGGCCACTTCTGGTATGAAGGCTTGGACAAATTTATAAGGCTTAAGCTTCAACTGATGCCAAANTCTGCGCGATCCGTAGCTACTAAAGTGGCAATGGACAGCTTGATTTTCGGTCCCATACATTTGTTTGTCTTCTTTACTTACATGGGATTGAGTGCTGGCAAGACTATTCCTCAGGTGAAGGAAGACTTGAAGAGGAATTATTTCCCAGCCTTGATTTTAGAAGGTGGGGTGTGGCCAGTTGTGCAGATTTTTAACTTTTGGTATGTTCCTGTGAAGTACCAGCTTCTCTATGTGAACTTGTTCTGCTTGCTGGATAGTGCTTTCCTGTCATGGTTGGAGCAACAAAAGGATGCACCTTGGAAACAACGGTTTACACCATTTCATTCTTCCGATAGAAAAGGAGGAGGTCAATGCCAGCGAGGAGATTGATGGAACATGAAACATAGTAATTAAAGCTTTNGAATATTTTGCTTCTCTGATGTTTTGGAAGTTGTAATACATAGATTTCTAGATAGATAAGCATTTTGTTTTGTTTACTTTTTCTCAGCCCCTAAAATTTTCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00061	330418	333415	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000061s00006557.1	PF04117.7	Mpv17_PMP22	183	249	6.60E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.565
SRR1783600	control	0.604
SRR1783602	moderate drought stress	0.678
SRR1811619	moderate drought stress	0.666

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.146
DRR006520	Root Summer glycyrrhizin high producing strain	1.133
DRR006521	Root Winter glycyrrhizin high producing strain	0.719
DRR006522	Root Winter glycyrrhizin high producing strain	0.569
DRR006523	Root Summer glycyrrhizin low producing strain	1.456
DRR006524	Root Summer glycyrrhizin low producing strain	1.421
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.350
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.339

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.371
SRR2868004	Drought Stress (root)	2.020
SRR2967015	Control (root)	1.711

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.967
SRR9715740	Leaf	10.131
SRR9715741	Leaf	5.442
SRR9715739	Root	0.389
SRR9715742	Root	0.352
SRR9715743	Root	0.829

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.685
SRR8749028	MeJA induced 9h	0.823
SRR8749029	MeJA induced 9h	0.876
SRR8749030	Uninduced	0.688
SRR8749031	Uninduced	0.701
SRR8749032	Uninduced	0.705

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.636
SRR8400027	Control - Root	1.077