Gene detail information of Glyur000061s00006555 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G21222.1 | 6.00E-115 | protein kinase family protein |
| NR | KHN41636.1 | 0 | Pentatricopeptide repeat-containing protein, partial [Glycine soja] |
| Swissprot | tr|Q8S9D1|PP395_ARATH | 5.00E-133 | Pentatricopeptide repeat-containing protein At5g21222 |
| trEMBL | tr|K7KRN3|K7KRN3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G35470.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00061 | 326399 | 329866 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000061s00006555.1 | PF13041.1 | PPR_2 | 174 | 223 | 1.50E-13 |
| Glyur000061s00006555.1 | PF13041.1 | PPR_2 | 279 | 327 | 3.00E-13 |
| Glyur000061s00006555.1 | PF13041.1 | PPR_2 | 349 | 396 | 2.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.313 |
| SRR1783600 | control | 0.340 |
| SRR1783602 | moderate drought stress | 0.313 |
| SRR1811619 | moderate drought stress | 0.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.907 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.736 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.475 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.268 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.769 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.803 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 53.463 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.451 |
| SRR2868004 | Drought Stress (root) | 29.972 |
| SRR2967015 | Control (root) | 14.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 120.697 |
| SRR9715740 | Leaf | 194.194 |
| SRR9715741 | Leaf | 107.209 |
| SRR9715739 | Root | 0.085 |
| SRR9715742 | Root | 0.788 |
| SRR9715743 | Root | 0.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.514 |
| SRR8749028 | MeJA induced 9h | 10.907 |
| SRR8749029 | MeJA induced 9h | 8.155 |
| SRR8749030 | Uninduced | 6.055 |
| SRR8749031 | Uninduced | 3.363 |
| SRR8749032 | Uninduced | 7.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.685 |
| SRR8400027 | Control - Root | 5.408 |