Gene detail

Gene detail information of Glyur000061s00006554

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24590.1	9.00E-94	plastidic type i signal peptidase 1
NR	XP_004503443.1	5.22E-155	PREDICTED: chloroplast processing peptidase-like [Cicer arietinum]
COG	YP_007166994.1	4.00E-60	signal peptidase I [Halothece sp. PCC 7418]
Swissprot	tr\|Q8H0W1\|PLSP1_ARATH	2.00E-116	Chloroplast processing peptidase (Precursor)
trEMBL	tr\|G7L8W8\|G7L8W8_MEDTR	9.00E-148	Uncharacterized protein {ECO:0000313\|EMBL:AFK48918.1}

Sequence

Transcript Sequence

>Glyur000061s00006554.1
CAGAGACTCCCTTGTTCGCCGCACATTATTATATAGTAATAATAAGATTTTTATTTATAATTTTTCTTTATCTCAAATCCAAGTCGAGCTGGTGCTTAGTGCAAGCAAGAACGAAGATATGCCATCCTTCTCCATCTTCCCATCACTCCCATCGCTTCAAAACCCTAACTTGGACCATGCCCACCTCTCCAAACCCTTCAAATTCCCCAATTTCCGTTTAAACTCAGCACTACTCCCTCCGCCACCACACTTTCGCCGCCACTTTCCGCAACTCCACCGTAGAACCCACTGCAAGGCTTTGAGGGATTCCGGCGAAGACGTTAAGGCGGTGTTGGACTCTGATGGCGGCGGAGGTGGAGGAGGCGACGACGACGACGACGGCGACGATGACCGGGAGGTGGAGAAGAAAGATGGGTCTTCAGGGCCTTTCCCCGACTGGTTGAATTTCACTTCTGATGACGCAAAAACGGTGTTTGCGGCTCTTGCAATATCGCTTGCATTTCGNACGTTCGTGGCTGAGCCGAGGTACATTCCTTCGCTGTCAATGTATCCTACATTTGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCCTACTATTTTAGAAAGCCATGTGCAAATGATATCGTGATATTTAAAAGCCCCCCAGTCCTTCAAGAAGTTGGATATACTGATGATGACGTTTTCATAAAACGTGTGGTTGCAAAAGAAGGGGATATTGTGGAGGTTCGTAAAGGGCGTCTTGTGGTTAATGGGGTTGAGAGGAATGAAAAGTTCATCTTCGAACCACCTAATTATGAGATGAAACCCACACGTGTGCCAGAGAACTACGTTTTTGTGATGGGAGACAACCGCAATAACAGCTACGACTCTCATGTGTGGGGTCCCCTGCCAGCCAAAAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAGTTGCTGGCACAGTTTCTAAGGAAGGTTGCCCNGTTGAAACCAAGCAAGAGACTACTACTCTTGCATCTCAATGATGACGGCAACACTTTGTTGTGGATTATATAGTTTTTGTCAAGCTTCATTTTATTACTCATTATGCCAATTTTAAAAATTTGGAATAACATTTTTAAGTTCCTTCTGCAAAACGAAGNCTGCCACAAATTTACTCAAACAAGTTTTCCAAGGATTTAATTTGCTTTAAGGAACATACGATACACTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00061	322262	325004	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03100	lepB, TPP	EC:3.4.21.89	Protein export	map03060
			Quorum sensing	map02024

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0008236 serine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000061s00006554.1	PF10502.4	Peptidase_S26	167	267	3.20E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.967
SRR1783600	control	15.873
SRR1783602	moderate drought stress	12.268
SRR1811619	moderate drought stress	12.079

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.694
DRR006520	Root Summer glycyrrhizin high producing strain	19.651
DRR006521	Root Winter glycyrrhizin high producing strain	10.142
DRR006522	Root Winter glycyrrhizin high producing strain	9.989
DRR006523	Root Summer glycyrrhizin low producing strain	17.997
DRR006524	Root Summer glycyrrhizin low producing strain	18.234
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.295
DRR006526	Leaf Summer glycyrrhizin high producing strain	46.638

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.343
SRR2868004	Drought Stress (root)	22.266
SRR2967015	Control (root)	24.200

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	54.972
SRR9715740	Leaf	57.881
SRR9715741	Leaf	49.954
SRR9715739	Root	19.210
SRR9715742	Root	14.090
SRR9715743	Root	14.841

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.176
SRR8749028	MeJA induced 9h	16.041
SRR8749029	MeJA induced 9h	22.935
SRR8749030	Uninduced	13.592
SRR8749031	Uninduced	11.305
SRR8749032	Uninduced	11.176

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.084
SRR8400027	Control - Root	33.810