Gene detail information of Glyur000061s00006549 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32230.1 | 1.00E-119 | proteinaceous RNase P 1 |
| NR | XP_007160328.1 | 0 | hypothetical protein PHAVU_002G312300g [Phaseolus vulgaris] |
| Swissprot | tr|Q66GI4|PRRP1_ARATH | 3.00E-152 | Proteinaceous RNase P 1, chloroplastic/mitochondrial (Precursor) |
| trEMBL | tr|V7CQ46|V7CQ46_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW32322.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00061 | 288838 | 292368 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K18213 | PRORP | EC:3.1.26.5 | RNA transport | map03013 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000061s00006549.1 | PF13812.1 | PPR_3 | 235 | 265 | 0.63 |
| Glyur000061s00006549.1 | PF01535.15 | PPR | 274 | 298 | 0.17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.231 |
| SRR1783600 | control | 1.221 |
| SRR1783602 | moderate drought stress | 1.582 |
| SRR1811619 | moderate drought stress | 1.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.868 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.865 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.441 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.370 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.797 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.952 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.707 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.865 |
| SRR2868004 | Drought Stress (root) | 3.846 |
| SRR2967015 | Control (root) | 3.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.938 |
| SRR9715740 | Leaf | 8.750 |
| SRR9715741 | Leaf | 5.606 |
| SRR9715739 | Root | 0.088 |
| SRR9715742 | Root | 0.759 |
| SRR9715743 | Root | 0.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.638 |
| SRR8749028 | MeJA induced 9h | 2.384 |
| SRR8749029 | MeJA induced 9h | 1.489 |
| SRR8749030 | Uninduced | 1.414 |
| SRR8749031 | Uninduced | 0.355 |
| SRR8749032 | Uninduced | 0.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.023 |
| SRR8400027 | Control - Root | 3.783 |