Gene detail information of Glyur000061s00006545.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29000.1 | 5.00E-131 | Tesmin/TSO1-like CXC domain-containing protein |
| NR | AET05254.2 | 0 | tesmin/TSO1-like CXC domain protein [Medicago truncatula] |
| Swissprot | tr|Q9SZD1|TCX5_ARATH | 0 | Protein tesmin/TSO1-like CXC 5 |
| trEMBL | tr|G7L886|G7L886_MEDTR | 0 | Tesmin/TSO1-like CXC domain protein {ECO:0000313|EMBL:AET05254.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00061 | 276883 | 282408 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CPP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000061s00006545.1 | PF03638.10 | TCR | 94 | 132 | 2.90E-12 |
| Glyur000061s00006545.1 | PF03638.10 | TCR | 178 | 217 | 8.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.147 |
| SRR1783600 | control | 6.327 |
| SRR1783602 | moderate drought stress | 10.691 |
| SRR1811619 | moderate drought stress | 10.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.187 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.162 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.876 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.530 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.892 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.878 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.206 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.246 |
| SRR2868004 | Drought Stress (root) | 7.598 |
| SRR2967015 | Control (root) | 9.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.521 |
| SRR9715740 | Leaf | 4.115 |
| SRR9715741 | Leaf | 4.457 |
| SRR9715739 | Root | 1.733 |
| SRR9715742 | Root | 5.036 |
| SRR9715743 | Root | 4.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.559 |
| SRR8749028 | MeJA induced 9h | 8.461 |
| SRR8749029 | MeJA induced 9h | 6.515 |
| SRR8749030 | Uninduced | 5.341 |
| SRR8749031 | Uninduced | 6.133 |
| SRR8749032 | Uninduced | 2.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.316 |
| SRR8400027 | Control - Root | 6.979 |