Gene detail

Gene detail information of Glyur000061s00006543.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28980.2	1.00E-91	CDK-activating kinase 1AT
NR	XP_004503449.1	0	PREDICTED: cyclin-dependent kinase F-1-like [Cicer arietinum]
Swissprot	tr\|O80345\|CDKF1_ARATH	6.00E-125	Cyclin-dependent kinase F-1
trEMBL	tr\|G7L878\|G7L878_MEDTR	0	Cyclin-dependent kinase {ECO:0000313\|EMBL:AET05246.2}

Sequence

Transcript Sequence

>Glyur000061s00006543.1
ATGGATTACGTGAAGAATAGGTATCAGGTTTCTTCCAGTGCTAGGATAGCAGTCCTCAACCTAACCACGTTTGCTTTAATGGCAAGGATACTCACTGAGCCTGGATTTGATGTTTCGGAGGAGAACCCACCAACACGTGATCACATTGCTTCTGATCTTGAAAGTTCATCACTTCATCATCCCGAGTTTTTTCCTCAGGCAGACAACTTAAGCCAATTGGGATGTGGAAATCAAGAGCAGGGAAGCAGTTGTCATGAAGAGTATTTTAGTGTTTTAGATGAGCTGAAAGCAAAGAGCTCCGCGGATGACATTGATAAGGATACTAACATTCCGGATGGAAATACCTCTTGTCTTGCAACGTGCACAACAAGTGACATAGATAACGACCCTATGAGAACGGCCTTTAGTTACGAAGCAATGGAAGGGGATGATAAAGAACTTGGTTGTTTCACTTCATGTGTTGGGACTCGTTGGTTCAGGGCTCCTGAGCTGCTTTATGGATCCACAAACTATGGTTTAGAGGTTGATCTCTGGTCACTGGGATGTATCTTTGCTGAGCTTTTAACTTTGAAGCCCTTATTTCCTGGAGCTGCTGATATTGATCAGCTCAGCAGAATTATTAATGTTTTGGGCAACCTTGATGAGAAAGCTTGGCCTGGTTGTTCAAAACTTCCTGATTATGGAATAATCTCGTTTAGCAAGGTGGAAAATCCTACTGGTCTTGACGCCTGCCTACCCGACCGTTCGCCTGATGAAGTGTCTCTTGTAAAAAAACTGGTTTGCTATGATCCGGCTAGGAGAGCTACAGCAATGGAGCTACTTCGTGACAAGTACTTTAACNAAGAACCTCTTCCTGTTCCTGTTTCTGAGCTGAGAGTTCCTTTGACCAGAAAAGGAGAAGATGAGGATTCTGTTGGTGGGTGGCATGATTACAATGACATGGGTTCTGATTCTGATTTTGATGACTTTGGCCCTGTGAATATCACCAGAACTGGCACCGGTTTCTCCATACAGTTTCCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00061	262630	271470	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000061s00006543.1	PF00069.20	Pkinase	149	279	1.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.569
SRR1783600	control	25.223
SRR1783602	moderate drought stress	45.523
SRR1811619	moderate drought stress	44.930

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.033
DRR006520	Root Summer glycyrrhizin high producing strain	38.299
DRR006521	Root Winter glycyrrhizin high producing strain	51.128
DRR006522	Root Winter glycyrrhizin high producing strain	49.734
DRR006523	Root Summer glycyrrhizin low producing strain	50.750
DRR006524	Root Summer glycyrrhizin low producing strain	50.466
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.020
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.550

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.998
SRR2868004	Drought Stress (root)	48.104
SRR2967015	Control (root)	56.167

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.456
SRR9715740	Leaf	19.063
SRR9715741	Leaf	26.110
SRR9715739	Root	27.585
SRR9715742	Root	29.346
SRR9715743	Root	28.263

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.785
SRR8749028	MeJA induced 9h	42.978
SRR8749029	MeJA induced 9h	39.159
SRR8749030	Uninduced	55.238
SRR8749031	Uninduced	55.864
SRR8749032	Uninduced	61.941

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.834
SRR8400027	Control - Root	23.059