Gene detail

Gene detail information of Glyur000061s00006501

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G35190.1	3.00E-124	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_004503479.1	0	PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform X1 [Cicer arietinum]
COG	YP_004303697.1	1.00E-54	2OG-Fe(II) oxygenase [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|F4IY03\|DIOX1_ARATH	6.00E-31	Probable 2-oxoglutarate-dependent dioxygenase At3g49630
trEMBL	tr\|I1J4J5\|I1J4J5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G01170.2}

Sequence

Transcript Sequence

>Glyur000061s00006501.1
CAGAAATTCAAGTTTAAACGCAGTAAAAGCACCATCCTTTTGCCTTGAAATTTTCTAATGGATAAAAAGAGTACCGAATAGCAGAAGTTACAGTAGTGATTGAGAACAGAACCTCAACCTGAGGTGCTATTCCAGAACCAGAATGGGAAAACAGAGCGCAGAAGCAGAAACCCCTCAAGCAGCAGCAGCAGTACTCAATTGTATCGACCTCTCCAATCCTAACACCAACCAATCCGTTCATTTGCTCAAACAGGCATGCACCGATTCTGGGTTTTTCTACCTTGTCAACCACGGAATAAGCCAGGACTTCATGGACGAGGTTTTTGCCCAAAGCAAGAAGCTTTTCACTCTTCCCCTCAACGAAAAGATGAAGCTCCTCCGGAACGATAAGCACAGGGGCTATACCCCTCTTTTTGACGAACTCCTTGATCCTGAAAACCAATTACACGGAGATTACAAAGAAGGGTATTATATTGGAGTTGAAGTGGCTGAGGATGACCCACAATCACAGAAACCTTTTTATGGGCCAAACATNTGGCCTGCACCAGGTAACCGAGTCAAAGTTAAAGGCTTTTTCAGACTTGTGAAGAAGAAATATCTGATTTCTACTTTGGTTTCCAGTCATCAAACAACTCATGATTTTGTGGCCTTTTTAGATATTCTGCCGGGATGGAGGGAGACCATGGAAAAATTCCACCGCCAGGCATTAGAAGTGGGGAAAGCAGTTGCAAGGATAATAGCCCTTGCACTTGGTTTGGATGCTAGTTTCTTTGATAGACNAGAAATCCTGGGAGAGCCCATTGCGCTTACGCGATTGCTACGCTATCAAGGTATTGAAATTGAATCAGTGGTCTTTGCTGGTCCTTCTATCTACTACTGTATTCATAATTCATCCTTGTTTTCGTGCCGTGAAGATCAAATCTCGGATCCCTCACAAGGATTATATGGAGCTGGAGCTCACACTGACTATGGTTTGATTACNCTGTTGGCAACAGATGATGTCCCGGGTCTTCAAATATGTAAGGATAAGGATGCTAAATCTCAGATATGGGAGGATGTGGCACCATTGAAGGGAGCATTTATAGTGAATCTTGGAGACATGCTGGAGCGCTGGAGCAACTGTGTTTTCAAGTCTACATTGCACAGAGTTGTAGGAAATGGTCAAGAGAGATATTCTATTGCATACTTTTTGGANCCTGGTCATGATTGTCTAGTGGAGTGCTTGCCAACCTGCAAATCAGATACAAATCCTCCCAAATTTCCTCCTATCTATTACCGAGACTACCTGAGTCAGCGCTACAAGGAAACTCATGCTGATCTACTTGTATACCAGAAACAACAATCTTGAGCGGTCACTGGCACTCACTTCACTTGGAGCTGTGCATCCTGGAGGTTTCTCTCTCTGTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00061	28397	31651	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000061s00006501.1	PF14226.1	DIOX_N	19	134	6.80E-33
Glyur000061s00006501.1	PF03171.15	2OG-FeII_Oxy	268	352	4.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.308
SRR1783600	control	7.152
SRR1783602	moderate drought stress	12.254
SRR1811619	moderate drought stress	12.117

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.415
DRR006520	Root Summer glycyrrhizin high producing strain	30.205
DRR006521	Root Winter glycyrrhizin high producing strain	23.598
DRR006522	Root Winter glycyrrhizin high producing strain	22.899
DRR006523	Root Summer glycyrrhizin low producing strain	30.216
DRR006524	Root Summer glycyrrhizin low producing strain	30.605
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.114
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.874

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.585
SRR2868004	Drought Stress (root)	24.976
SRR2967015	Control (root)	25.046

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.934
SRR9715740	Leaf	28.086
SRR9715741	Leaf	25.123
SRR9715739	Root	9.414
SRR9715742	Root	11.928
SRR9715743	Root	11.110

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.564
SRR8749028	MeJA induced 9h	10.749
SRR8749029	MeJA induced 9h	13.002
SRR8749030	Uninduced	8.199
SRR8749031	Uninduced	5.617
SRR8749032	Uninduced	4.593

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.389
SRR8400027	Control - Root	31.684