Gene detail

Gene detail information of Glyur000061s00006498

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G40570.1	initiator tRNA phosphoribosyl transferase family protein
NR	XP_004503482.1	PREDICTED: uncharacterized protein C3F10.06c-like isoform X1 [Cicer arietinum]
trEMBL	tr\|G7L7G1\|G7L7G1_MEDTR	Initiator tRNA phosphoribosyl-transferase, putative {ECO:0000313\|EMBL:AET05193.1}

Sequence

Transcript Sequence

>Glyur000061s00006498.1
TAGATCGGTTGACAGAGAGAGAGAGAGAGAGATGGAGGAACAAGAAGGAGGCGCAAAGCAGCTAAGCATATACAAGGCAGCGAGAAGCATTAAGCGAAGAGACAACAGTCTGTACAACGCACTGAGATCGATCTACCACGACTCCATCTTCGTTGGTGAGATCTCTCAGTTATGGCCTCAGCTCCCTCTTGTCGCCAACCTCCGTTGCGGCCTCTGGTACTCTCCCACTTTCCACTCTACCTGTTACTTCAAATCCACCGATGGCCACACCAATAACTGCTCCTTCACCACCTCTCGCCTCAATCTCCACCTCGCCGGACAGAAGGGAGGTTGTATCATAGTTGATTCCACTCGAAGAGGAAAGCGTTTCCCTGACAGCATGTCCAAAACCATACCCATTTGGACCTGTGTTCTGAATCGGGCAATTGCCCATTTCAGAAGGGACTCTAAGGTGCATGATATTGATATGGTTCAGGATTCTGATGAGATTGCAAGAGATGTCTCATCTGATTCTGATTGGGATTGCTCATTGCATCTCCCTCTGTGGGTTCCAGAAACAGAGAAGGCTTCCATTGAGGGTCGGTTGGAAGAATGGACAGAACAACTGAGAGCAAGTGGAGCTGACATTGCTTCCATTGCTGCGTGCTTGAAGAAACCCCTGCGCCCTCTGTGGATTTCGCAGAAAACCGTCATTTGGTTAAATGAGGTGCCTCACCATGATTCTTGGGATTTCACACCCGTCATACTTGTGTCTGCATCTTCTTCGATTGGCGTGAGCCAACACAGGACTGCCTCTGAGTTTAGCTGGAATTACATACCGGGTGCCGGTGACGACGAAGAAAACTGGGCCAGGGGCTTATCTCCCGCTCTGTTCTGGAATCATGTTTATGATCTTATAAACTCGGGTCCTGAGGTGTGTAACCAGAAGGTTGCGGATATAGTTGAAAAGAGTAGAGTACGCCGTTCTTATAGAGGAGAAAGTGCACCACAGATCAGAGTTAAAACCCTTAAGTCAGATTCTCTTTCACATGAAGAACCTTCACTAGCTTCTGACATTTCAAACGTTGAAAATGACACCGAGTCTTCTGATGNTTTTGCAATATCTTGGTTGGGTTCAACTAATTTGGCAGTTGGCGCATCTCAGTTCGCTGCAGATGCGGCTGATGTTGATTGCATTTTGAATTGTGATCATGAGTCCATCTCTGTCCGTATTCCCAGTCCTGAAGCGTATCTGCATCTTCCAATGGTGACTTCAAAGTTTGATCGGTTTTCCTTGTTAAACAATCTTCCTAAAGCTGTGAGCTTTGCAAAGTTCAACCTCAGCCAAGGAAAACGACTTCTAGTTTGTTGTAATAATGGGGAAGATATTAGTGCATGTGTTTGCTTAGCAATTTTGATGTCATTATTTGATGAAAAAGGTACTTTTGATGATGGGAAATCCTTCAATACAACAACACACGTCACTAAATGGGATNTGAAGCGACGGCTTGTGTATGTGTGTAAGTTTGCACCAAATGCCCGGCCATCCAGAGGAAATTTGAGGCAAGTTTTTAACTTTCTTATTGGTGGAAAATGCGTTCATCAACGTCTGGACAACGGAAGAGAAGAGTAGTTTCAAGGACACGTGATTCGTGAAGTATCATTATCATTGCCCATTCTTTGAATAATTAAATAAACGACTCTAACTTATTACCCTTGATTTTTGCATTGCGCGGATGTGATACTATTCCAAACCCAGCTGTAGGGAATTGTTGTATGCCTAAGTTTATGCGAAATTTGTAAAACAGAATAATAAATTCTGCTTAAGATCAGATTCATTCAAAGTTTAACCTATTGAACTTTACTCAAAATCTAGTCCATACTTGACTCCAACCTTTGATTTATACATCAATGATGTAAAGGAGTGATAGTCAGATATTACTATAGCTGTTGTACGCTGTAGCGGGACTAATTTTATGCTATTTTCATACCGCAGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00061	4617	7602	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0019988 charged-tRNA amino acid modification

molecular_function
GO:0043399 tRNA A64-2'-O-ribosylphosphate transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000061s00006498.1	PF04179.7	Init_tRNA_PT	19	510	3.40E-133

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.087
SRR1783600	control	1.118
SRR1783602	moderate drought stress	3.797
SRR1811619	moderate drought stress	3.852

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.463
DRR006520	Root Summer glycyrrhizin high producing strain	6.294
DRR006521	Root Winter glycyrrhizin high producing strain	29.928
DRR006522	Root Winter glycyrrhizin high producing strain	28.690
DRR006523	Root Summer glycyrrhizin low producing strain	2.804
DRR006524	Root Summer glycyrrhizin low producing strain	2.794
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.553
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.570

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.210
SRR2868004	Drought Stress (root)	13.843
SRR2967015	Control (root)	22.111

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.645
SRR9715740	Leaf	9.761
SRR9715741	Leaf	10.763
SRR9715739	Root	1.497
SRR9715742	Root	5.536
SRR9715743	Root	4.937

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.859
SRR8749028	MeJA induced 9h	12.123
SRR8749029	MeJA induced 9h	12.106
SRR8749030	Uninduced	7.606
SRR8749031	Uninduced	7.662
SRR8749032	Uninduced	8.647

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.183
SRR8400027	Control - Root	9.893