Gene detail

Gene detail information of Glyur000060s00004782.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61350.1	7.00E-100	SKP1 interacting partner 4
NR	XP_004510793.1	0	PREDICTED: F-box/kelch-repeat protein SKIP4-like isoform X1 [Cicer arietinum]
COG	YP_001818727.1	1.00E-12	metallophosphoesterase [Opitutus terrae PB90-1]
Swissprot	tr\|Q9M2C9\|SKIP4_ARATH	9.00E-122	F-box/kelch-repeat protein SKIP4
trEMBL	tr\|A0A072TN21\|A0A072TN21_MEDTR	0	SKP1 interacting partner 4 {ECO:0000313\|EMBL:KEH18864.1}

Sequence

Transcript Sequence

>Glyur000060s00004782.1
ATGATCAGCCAATCGCACCCTGGATGTCACGAAGACGAATCCCTAGTTCCGTGCAGGTCCTCTCCAATAATACCAATGGAGCATGTAGATGATGGGAAAGAATCATCCAATAATGTTGATGAAGCTGAAGTCACTAGTACTCCACTGATTTGTGGCCTTCCAGATGACATTTCTCTTTTGTGCCTGGCAAGAGTTCCTAGAAAATATCATTCAGTCCTGAAGTGTGTCTCGAAAAGATGGAGGGAGTTAGTTTGCAGTGAAGAGTGGCTTTATTACCGCAAAAAACATAAACTCGATGAGACCTGGATCTATGCTTTGTGCATGGACAAACTAGATCAAATTTGCTGTTATGTTTTGGATCCAAGTCCAACCTCCTCAAGAAAATGTTGGAAGCTCATTCATGGGCTTCCTCCTCACATCATGAGAAGAAAAGGCATGGGTTTCGAAGCTTTGGGAAGCAAGCTATTCTTATTAGGTGGCTGTGGCTGGTCTGAAGATGCTACTGATGAGGTTTATTCATATAATGCTTCCTTGAACTCTTGGGTAAAAGCTGCTTCCTTGTCAACTGCTAGGTGCTACTTTGCTTGTGAAGTCATGGATGAAAAACTATATGCTATTGGTGGCATAGGTTCAAATTCAAGTGATCCTCATTCTTGGGATACTTTTGACCCTTGTACAAATGGTTGGACATCTCACAGAGATCCTAATATTGTTCCTGAAATTGAAGATTCAGTGGTTATGGATGGGAAGATATACATCCGATGTGGCAAATCTCCCGTGACCCCTCACGTGTATGCTGTTGTATACGAACCATCGAGTGGCACGTGGCAGCATGCAGATGCTGACATGGTTTCAGGATGGAGAGGCCCTGCAGTTGTTGTTGATGGGGTCCTTTTCGTTTTGGATCAGAGTTCCGGAACCCGGCTAATGATGTGGCATGAAGAGAGACGCGAGTGGATACCTGTTGGGAAGTTGTCACCACTGCTTACAAGGCCACCCTGCCAGCTTGTTGCAGTTGGTAAAAGCATTTTTGTTGTTGGGAAAGGGCTTAGCACTGTGGTTGTTGATGTGGGTGATTTGGGGAACATGGGAAGGGTCATGGTGGGTTCTTCTATACCCAAATTACTTTCTGATTACAATGTAATTAGCTGTAAATGCTTGGCAATCTGAAGAGTAAATAACTTCCAGTGTGTATTATTGTTGTGTTGAGATACATGTATTAATGTTGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00060	442328	445596	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000060s00004782.1	PF00646.28	F-box	50	86	1.50E-05
Glyur000060s00004782.1	PF01344.20	Kelch_1	142	187	2.20E-05
Glyur000060s00004782.1	PF01344.20	Kelch_1	190	231	2.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.630
SRR1783600	control	3.570
SRR1783602	moderate drought stress	6.033
SRR1811619	moderate drought stress	5.975

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.794
DRR006520	Root Summer glycyrrhizin high producing strain	6.982
DRR006521	Root Winter glycyrrhizin high producing strain	8.196
DRR006522	Root Winter glycyrrhizin high producing strain	8.171
DRR006523	Root Summer glycyrrhizin low producing strain	5.249
DRR006524	Root Summer glycyrrhizin low producing strain	5.078
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.020
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.043

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.603
SRR2868004	Drought Stress (root)	12.764
SRR2967015	Control (root)	13.279

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.908
SRR9715740	Leaf	5.179
SRR9715741	Leaf	4.878
SRR9715739	Root	7.706
SRR9715742	Root	5.255
SRR9715743	Root	7.080

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.999
SRR8749028	MeJA induced 9h	6.393
SRR8749029	MeJA induced 9h	4.647
SRR8749030	Uninduced	3.393
SRR8749031	Uninduced	4.149
SRR8749032	Uninduced	5.609

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.958
SRR8400027	Control - Root	9.162